Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 AC116407.3-201ENST00000623905 1129 ntBASIC18.56■□□□□ 0.56
CFAP54Q96N23 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CFAP54Q96N23 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CFAP54Q96N23 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CFAP54Q96N23 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CFAP54Q96N23 AC104109.2-201ENST00000602919 1418 ntBASIC18.56■□□□□ 0.56
CFAP54Q96N23 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.56■□□□□ 0.56
CFAP54Q96N23 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CFAP54Q96N23 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CFAP54Q96N23 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CFAP54Q96N23 SCARNA2-201ENST00000458748 420 ntBASIC18.56■□□□□ 0.56
CFAP54Q96N23 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CFAP54Q96N23 AL356488.2-201ENST00000602755 427 ntBASIC18.56■□□□□ 0.56
CFAP54Q96N23 AC024243.1-201ENST00000609234 778 ntBASIC18.56■□□□□ 0.56
CFAP54Q96N23 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CFAP54Q96N23 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CFAP54Q96N23 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CFAP54Q96N23 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CFAP54Q96N23 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CFAP54Q96N23 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC18.55■□□□□ 0.56
CFAP54Q96N23 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CFAP54Q96N23 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.55■□□□□ 0.56
CFAP54Q96N23 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.55■□□□□ 0.56
CFAP54Q96N23 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CFAP54Q96N23 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC18.55■□□□□ 0.56
CFAP54Q96N23 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.55■□□□□ 0.56
CFAP54Q96N23 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC18.55■□□□□ 0.56
CFAP54Q96N23 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CFAP54Q96N23 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CFAP54Q96N23 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.55■□□□□ 0.56
CFAP54Q96N23 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CFAP54Q96N23 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.55■□□□□ 0.56
CFAP54Q96N23 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.55■□□□□ 0.56
CFAP54Q96N23 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.55■□□□□ 0.56
CFAP54Q96N23 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.55■□□□□ 0.56
CFAP54Q96N23 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
CFAP54Q96N23 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CFAP54Q96N23 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
CFAP54Q96N23 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
CFAP54Q96N23 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CFAP54Q96N23 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.54■□□□□ 0.56
CFAP54Q96N23 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CFAP54Q96N23 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.54■□□□□ 0.56
CFAP54Q96N23 HNRNPDP1-201ENST00000439535 754 ntBASIC18.54■□□□□ 0.56
CFAP54Q96N23 AC093909.1-201ENST00000504731 1122 ntBASIC18.54■□□□□ 0.56
CFAP54Q96N23 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.54■□□□□ 0.56
CFAP54Q96N23 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CFAP54Q96N23 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CFAP54Q96N23 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CFAP54Q96N23 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
CFAP54Q96N23 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.54■□□□□ 0.56
CFAP54Q96N23 WDR53-203ENST00000429115 683 ntTSL 2 BASIC18.54■□□□□ 0.56
CFAP54Q96N23 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CFAP54Q96N23 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.54■□□□□ 0.56
CFAP54Q96N23 MIR2861-201ENST00000636310 90 ntBASIC18.54■□□□□ 0.56
CFAP54Q96N23 KRT18P28-201ENST00000453838 1332 ntBASIC18.54■□□□□ 0.56
CFAP54Q96N23 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.54■□□□□ 0.56
CFAP54Q96N23 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.54■□□□□ 0.56
CFAP54Q96N23 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CFAP54Q96N23 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CFAP54Q96N23 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.53■□□□□ 0.56
CFAP54Q96N23 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC18.53■□□□□ 0.56
CFAP54Q96N23 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC18.53■□□□□ 0.56
CFAP54Q96N23 AC007274.1-201ENST00000439805 662 ntBASIC18.53■□□□□ 0.56
CFAP54Q96N23 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.53■□□□□ 0.56
CFAP54Q96N23 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.53■□□□□ 0.56
CFAP54Q96N23 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.53■□□□□ 0.56
CFAP54Q96N23 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CFAP54Q96N23 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CFAP54Q96N23 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CFAP54Q96N23 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.53■□□□□ 0.56
CFAP54Q96N23 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.53■□□□□ 0.56
CFAP54Q96N23 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.53■□□□□ 0.56
CFAP54Q96N23 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CFAP54Q96N23 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.53■□□□□ 0.56
CFAP54Q96N23 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.53■□□□□ 0.56
CFAP54Q96N23 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CFAP54Q96N23 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CFAP54Q96N23 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CFAP54Q96N23 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CFAP54Q96N23 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CFAP54Q96N23 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.53■□□□□ 0.56
CFAP54Q96N23 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CFAP54Q96N23 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.53■□□□□ 0.56
CFAP54Q96N23 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CFAP54Q96N23 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.53■□□□□ 0.56
CFAP54Q96N23 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CFAP54Q96N23 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
CFAP54Q96N23 AC034105.1-201ENST00000563488 319 ntBASIC18.53■□□□□ 0.56
CFAP54Q96N23 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CFAP54Q96N23 AC079602.3-201ENST00000623931 403 ntBASIC18.53■□□□□ 0.56
CFAP54Q96N23 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CFAP54Q96N23 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CFAP54Q96N23 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CFAP54Q96N23 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.52■□□□□ 0.56
CFAP54Q96N23 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.52■□□□□ 0.56
CFAP54Q96N23 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CFAP54Q96N23 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CFAP54Q96N23 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CFAP54Q96N23 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms