Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 AC018445.3-201ENST00000624177 1945 ntBASIC19.42■□□□□ 0.7
RTL3Q8N8U3 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RTL3Q8N8U3 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RTL3Q8N8U3 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
RTL3Q8N8U3 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 CCR12P-201ENST00000446203 998 ntBASIC19.41■□□□□ 0.7
RTL3Q8N8U3 TSPY17P-201ENST00000450329 467 ntBASIC19.41■□□□□ 0.7
RTL3Q8N8U3 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 AL353719.1-201ENST00000566847 864 ntBASIC19.41■□□□□ 0.7
RTL3Q8N8U3 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 AC008622.2-201ENST00000617006 1229 ntBASIC19.41■□□□□ 0.7
RTL3Q8N8U3 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 AP000974.1-201ENST00000623909 2387 ntBASIC19.41■□□□□ 0.7
RTL3Q8N8U3 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 AL512353.2-201ENST00000448759 1962 ntBASIC19.41■□□□□ 0.7
RTL3Q8N8U3 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
RTL3Q8N8U3 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RTL3Q8N8U3 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RTL3Q8N8U3 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.4■□□□□ 0.7
RTL3Q8N8U3 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RTL3Q8N8U3 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.4■□□□□ 0.7
RTL3Q8N8U3 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.4■□□□□ 0.7
RTL3Q8N8U3 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
RTL3Q8N8U3 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RTL3Q8N8U3 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RTL3Q8N8U3 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.4■□□□□ 0.7
RTL3Q8N8U3 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
RTL3Q8N8U3 AC116562.4-202ENST00000641738 218 ntBASIC19.4■□□□□ 0.7
RTL3Q8N8U3 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
RTL3Q8N8U3 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RTL3Q8N8U3 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.4■□□□□ 0.7
RTL3Q8N8U3 AC006333.2-201ENST00000607957 2099 ntBASIC19.4■□□□□ 0.7
RTL3Q8N8U3 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RTL3Q8N8U3 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.4■□□□□ 0.7
RTL3Q8N8U3 AC092338.2-201ENST00000568827 1415 ntBASIC19.4■□□□□ 0.7
RTL3Q8N8U3 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
RTL3Q8N8U3 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.4■□□□□ 0.7
RTL3Q8N8U3 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
RTL3Q8N8U3 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.39■□□□□ 0.69
RTL3Q8N8U3 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.39■□□□□ 0.69
RTL3Q8N8U3 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.39■□□□□ 0.69
RTL3Q8N8U3 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.39■□□□□ 0.69
RTL3Q8N8U3 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
RTL3Q8N8U3 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
RTL3Q8N8U3 AC083906.6-201ENST00000641366 219 ntBASIC19.39■□□□□ 0.69
RTL3Q8N8U3 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RTL3Q8N8U3 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RTL3Q8N8U3 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RTL3Q8N8U3 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RTL3Q8N8U3 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RTL3Q8N8U3 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RTL3Q8N8U3 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
RTL3Q8N8U3 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.39■□□□□ 0.69
RTL3Q8N8U3 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
RTL3Q8N8U3 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
RTL3Q8N8U3 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
RTL3Q8N8U3 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RTL3Q8N8U3 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RTL3Q8N8U3 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RTL3Q8N8U3 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RTL3Q8N8U3 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RTL3Q8N8U3 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
RTL3Q8N8U3 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
RTL3Q8N8U3 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RTL3Q8N8U3 AC007663.1-201ENST00000438948 1240 ntBASIC19.38■□□□□ 0.69
RTL3Q8N8U3 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
RTL3Q8N8U3 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.38■□□□□ 0.69
RTL3Q8N8U3 KRT8P32-201ENST00000512863 1461 ntBASIC19.38■□□□□ 0.69
RTL3Q8N8U3 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
RTL3Q8N8U3 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RTL3Q8N8U3 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.38■□□□□ 0.69
RTL3Q8N8U3 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.38■□□□□ 0.69
RTL3Q8N8U3 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RTL3Q8N8U3 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RTL3Q8N8U3 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RTL3Q8N8U3 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RTL3Q8N8U3 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
RTL3Q8N8U3 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms