Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 AC006333.2-201ENST00000607957 2099 ntBASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 NBPF21P-201ENST00000425093 1451 ntBASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 MTDHP1-201ENST00000605323 784 ntBASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 CROCCP3-202ENST00000420820 1947 ntBASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLIP4Q8N3C7 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 AC026366.1-201ENST00000488803 879 ntBASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 FP475955.4-201ENST00000623131 1990 ntBASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLIP4Q8N3C7 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
CLIP4Q8N3C7 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CLIP4Q8N3C7 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.71■□□□□ 0.42
CLIP4Q8N3C7 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 IRX1P1-201ENST00000438849 1838 ntBASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 AC069544.1-201ENST00000609399 999 ntBASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CLIP4Q8N3C7 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms