Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 FAM207BP-201ENST00000447172 505 ntBASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 PRSS44-201ENST00000515154 1146 ntBASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC116Q8IYX3 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC116Q8IYX3 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC116Q8IYX3 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC116Q8IYX3 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC116Q8IYX3 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC116Q8IYX3 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC116Q8IYX3 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC116Q8IYX3 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.83■□□□□ 0.45
CCDC116Q8IYX3 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC116Q8IYX3 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC116Q8IYX3 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 MESTP1-201ENST00000404287 994 ntBASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 AC008550.1-201ENST00000511500 884 ntBASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 NUDT16P1-203ENST00000513809 620 ntBASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.83■□□□□ 0.44
CCDC116Q8IYX3 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC116Q8IYX3 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC116Q8IYX3 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC116Q8IYX3 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC116Q8IYX3 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC116Q8IYX3 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC116Q8IYX3 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms