Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 COPE-203ENST00000351079 907 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 AP000523.1-201ENST00000398242 1049 ntBASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 MIR3180-5-201ENST00000583743 153 ntBASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC60Q8IWA6 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 RCC2P3-201ENST00000418112 1537 ntBASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 AL031133.1-201ENST00000406807 723 ntBASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 HOMER2P1-201ENST00000455653 964 ntBASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC60Q8IWA6 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC21.03■□□□□ 0.96
CCDC60Q8IWA6 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC60Q8IWA6 MED25-212ENST00000618715 1467 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC60Q8IWA6 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.03■□□□□ 0.96
CCDC60Q8IWA6 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC60Q8IWA6 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC21.03■□□□□ 0.96
CCDC60Q8IWA6 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC60Q8IWA6 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC21.03■□□□□ 0.96
CCDC60Q8IWA6 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC60Q8IWA6 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC60Q8IWA6 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC60Q8IWA6 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC60Q8IWA6 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC21.03■□□□□ 0.96
CCDC60Q8IWA6 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
CCDC60Q8IWA6 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC60Q8IWA6 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC60Q8IWA6 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 SNX5-210ENST00000481323 562 ntTSL 3 BASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 AC008556.1-201ENST00000610908 2040 ntBASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.02■□□□□ 0.96
CCDC60Q8IWA6 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CCDC60Q8IWA6 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CCDC60Q8IWA6 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC21.02■□□□□ 0.95
CCDC60Q8IWA6 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CCDC60Q8IWA6 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CCDC60Q8IWA6 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 GAD2-202ENST00000376248 680 ntTSL 5 BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 ISCU-203ENST00000431221 799 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms