Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 AC004911.1-201ENST00000416316 871 ntBASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUDCD3Q8IVD9 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 AF201337.1-201ENST00000520239 748 ntBASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 AC105036.2-201ENST00000569468 176 ntBASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUDCD3Q8IVD9 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 TUBB8P6-201ENST00000436895 1288 ntBASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 KRT18P16-201ENST00000510337 1294 ntBASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 AC073592.3-201ENST00000625118 1834 ntBASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NUDCD3Q8IVD9 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUDCD3Q8IVD9 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUDCD3Q8IVD9 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUDCD3Q8IVD9 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
NUDCD3Q8IVD9 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
NUDCD3Q8IVD9 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUDCD3Q8IVD9 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUDCD3Q8IVD9 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUDCD3Q8IVD9 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUDCD3Q8IVD9 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
NUDCD3Q8IVD9 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms