Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 GFER-205ENST00000569451 517 ntTSL 5 BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 AC097358.2-201ENST00000607541 1159 ntBASIC11.85□□□□□ -0.51
LINC00643Q86TS7 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00643Q86TS7 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00643Q86TS7 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
LINC00643Q86TS7 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 HES6-205ENST00000409356 528 ntTSL 2 BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms