Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 ATP6V0B-203ENST00000468183 2432 ntTSL 1 (best)28.27■■■□□ 2.124e-7■□□□□ 8.9
U2AF1Q01081 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.114e-7■□□□□ 8.9
U2AF1Q01081 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC26.43■■□□□ 1.824e-7■□□□□ 8.9
U2AF1Q01081 ATP6V0B-206ENST00000472277 536 ntTSL 325.15■■□□□ 1.624e-7■□□□□ 8.9
U2AF1Q01081 ATP6V0B-202ENST00000461670 530 ntTSL 523.46■■□□□ 1.354e-7■□□□□ 8.9
U2AF1Q01081 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.044e-7■□□□□ 8.9
U2AF1Q01081 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.924e-7■□□□□ 8.9
U2AF1Q01081 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC20.17■□□□□ 0.824e-7■□□□□ 8.9
U2AF1Q01081 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC20.17■□□□□ 0.824e-7■□□□□ 8.9
U2AF1Q01081 ATP6V0B-209ENST00000496131 962 ntTSL 318.43■□□□□ 0.544e-7■□□□□ 8.9
U2AF1Q01081 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.54e-7■□□□□ 8.9
U2AF1Q01081 ATP6V0B-207ENST00000472505 411 ntTSL 517.57■□□□□ 0.44e-7■□□□□ 8.9
U2AF1Q01081 HMGB2-205ENST00000511316 1841 ntTSL 216.21■□□□□ 0.194e-7■□□□□ 8.9
U2AF1Q01081 HMGB2-201ENST00000296503 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.184e-7■□□□□ 8.9
U2AF1Q01081 SNRPD1-204ENST00000582475 723 ntTSL 3 BASIC16.1■□□□□ 0.174e-7■□□□□ 8.9
U2AF1Q01081 SNRPD1-203ENST00000579618 320 ntTSL 5 BASIC13.53□□□□□ -0.244e-7■□□□□ 8.9
U2AF1Q01081 SNRPD1-201ENST00000300413 4909 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.684e-7■□□□□ 8.9
U2AF1Q01081 ATP6V0B-212ENST00000532072 577 ntTSL 49.43□□□□□ -0.94e-7■□□□□ 8.9
U2AF1Q01081 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC8.93□□□□□ -0.984e-7■□□□□ 8.9
U2AF1Q01081 NEDD9-214ENST00000513989 587 ntTSL 413.51□□□□□ -0.252e-6■□□□□ 8.9
U2AF1Q01081 NEDD9-203ENST00000397378 470 ntTSL 312.5□□□□□ -0.412e-6■□□□□ 8.9
U2AF1Q01081 NEDD9-211ENST00000508546 581 ntTSL 512.5□□□□□ -0.412e-6■□□□□ 8.9
U2AF1Q01081 ARHGEF10L-207ENST00000482359 604 ntTSL 520.66■□□□□ 0.91e-7■□□□□ 8.9
U2AF1Q01081 ARHGEF10L-201ENST00000167825 3018 ntTSL 217.41■□□□□ 0.381e-7■□□□□ 8.9
U2AF1Q01081 ARHGEF10L-202ENST00000361221 4488 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.321e-7■□□□□ 8.9
U2AF1Q01081 ARHGEF10L-206ENST00000469726 4585 ntTSL 216.69■□□□□ 0.261e-7■□□□□ 8.9
U2AF1Q01081 ARHGEF10L-203ENST00000375408 3685 ntTSL 5 BASIC15.13■□□□□ 0.011e-7■□□□□ 8.9
U2AF1Q01081 ARHGEF10L-204ENST00000375415 4035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.151e-7■□□□□ 8.9
U2AF1Q01081 FAM208B-210ENST00000496681 522 ntTSL 331.55■■■□□ 2.647e-7■□□□□ 8.8
U2AF1Q01081 SLC39A14-209ENST00000520644 377 ntTSL 526.69■■□□□ 1.867e-7■□□□□ 8.8
U2AF1Q01081 FAM208B-207ENST00000480839 540 ntTSL 325.81■■□□□ 1.727e-7■□□□□ 8.8
U2AF1Q01081 SLC39A14-212ENST00000524285 570 ntTSL 423.7■■□□□ 1.387e-7■□□□□ 8.8
U2AF1Q01081 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.837e-7■□□□□ 8.8
U2AF1Q01081 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.696e-10■□□□□ 8.8
U2AF1Q01081 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC18.58■□□□□ 0.566e-10■□□□□ 8.8
U2AF1Q01081 CDCA7-205ENST00000435616 928 ntTSL 317.17■□□□□ 0.346e-10■□□□□ 8.8
U2AF1Q01081 CDCA7-208ENST00000496441 2943 ntTSL 215.05■□□□□ -06e-10■□□□□ 8.8
U2AF1Q01081 CDCA7-204ENST00000410101 1369 ntTSL 2 BASIC14.75□□□□□ -0.056e-10■□□□□ 8.8
U2AF1Q01081 CDCA7-206ENST00000467411 3176 ntTSL 1 (best)13.43□□□□□ -0.266e-10■□□□□ 8.8
U2AF1Q01081 CDCA7-201ENST00000306721 2789 ntTSL 2 BASIC12.97□□□□□ -0.336e-10■□□□□ 8.8
U2AF1Q01081 CDCA7-207ENST00000468359 906 ntTSL 310.78□□□□□ -0.686e-10■□□□□ 8.8
U2AF1Q01081 FRAS1-205ENST00000509802 564 ntTSL 59.78□□□□□ -0.842e-8■□□□□ 8.8
U2AF1Q01081 FANCA-212ENST00000563513 571 ntTSL 425.02■■□□□ 1.64e-8■□□□□ 8.8
U2AF1Q01081 HERC1-212ENST00000561348 588 ntTSL 213.56□□□□□ -0.243e-7■□□□□ 8.8
U2AF1Q01081 HERC1-213ENST00000561359 551 ntTSL 36.94□□□□□ -1.33e-7■□□□□ 8.8
U2AF1Q01081 HERC1-215ENST00000561436 551 ntTSL 44.87□□□□□ -1.633e-7■□□□□ 8.8
U2AF1Q01081 NONO-203ENST00000373856 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.294e-6■□□□□ 8.8
U2AF1Q01081 NONO-202ENST00000373841 2606 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.094e-6■□□□□ 8.8
U2AF1Q01081 NONO-201ENST00000276079 2713 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.314e-6■□□□□ 8.8
U2AF1Q01081 NONO-215ENST00000535149 2882 ntTSL 2 BASIC12.79□□□□□ -0.364e-6■□□□□ 8.8
U2AF1Q01081 NONO-212ENST00000474431 644 ntTSL 510.66□□□□□ -0.74e-6■□□□□ 8.8
U2AF1Q01081 NONO-204ENST00000413858 855 ntTSL 310.61□□□□□ -0.714e-6■□□□□ 8.8
U2AF1Q01081 NONO-210ENST00000472185 397 ntTSL 58.85□□□□□ -0.994e-6■□□□□ 8.8
U2AF1Q01081 NONO-206ENST00000420903 622 ntTSL 38.22□□□□□ -1.094e-6■□□□□ 8.8
U2AF1Q01081 NONO-207ENST00000450092 491 ntTSL 57.69□□□□□ -1.184e-6■□□□□ 8.8
U2AF1Q01081 NONO-208ENST00000454976 726 ntTSL 47.55□□□□□ -1.24e-6■□□□□ 8.8
U2AF1Q01081 NONO-213ENST00000486613 555 ntTSL 25.44□□□□□ -1.544e-6■□□□□ 8.8
U2AF1Q01081 POGZ-216ENST00000497787 490 ntTSL 210.18□□□□□ -0.789e-13■□□□□ 8.8
U2AF1Q01081 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.354e-9■□□□□ 8.8
U2AF1Q01081 AL136115.2-201ENST00000602889 587 ntTSL 5 BASIC15.47■□□□□ 0.076e-8■□□□□ 8.8
U2AF1Q01081 PTP4A2-218ENST00000602725 3353 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.756e-8■□□□□ 8.8
U2AF1Q01081 INTS11-242ENST00000531377 816 ntTSL 523.37■■□□□ 1.331e-7■□□□□ 8.8
U2AF1Q01081 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC19.51■□□□□ 0.711e-7■□□□□ 8.8
U2AF1Q01081 AC016723.1-202ENST00000436982 643 ntTSL 5 BASIC12.16□□□□□ -0.461e-7■□□□□ 8.8
U2AF1Q01081 UBR4-209ENST00000465036 392 ntTSL 24.96□□□□□ -1.621e-7■□□□□ 8.8
U2AF1Q01081 TNRC6A-215ENST00000568903 943 ntTSL 213.13□□□□□ -0.313e-7■□□□□ 8.7
U2AF1Q01081 TNRC6A-212ENST00000567232 523 ntTSL 511.19□□□□□ -0.623e-7■□□□□ 8.7
U2AF1Q01081 TNRC6A-203ENST00000450465 3700 ntTSL 210.92□□□□□ -0.663e-7■□□□□ 8.7
U2AF1Q01081 TNRC6A-207ENST00000491718 7956 ntTSL 1 (best)7.86□□□□□ -1.153e-7■□□□□ 8.7
U2AF1Q01081 NOTUM-202ENST00000425009 996 ntTSL 332.5■■■□□ 2.791e-9■□□□□ 8.7
U2AF1Q01081 NOTUM-203ENST00000477214 813 ntTSL 531.44■■■□□ 2.621e-9■□□□□ 8.7
U2AF1Q01081 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.091e-9■□□□□ 8.7
U2AF1Q01081 SQSTM1-215ENST00000514093 842 ntTSL 527.14■■□□□ 1.943e-6■□□□□ 8.7
U2AF1Q01081 NOTUM-204ENST00000489218 972 ntTSL 225.52■■□□□ 1.681e-9■□□□□ 8.7
U2AF1Q01081 SQSTM1-204ENST00000453046 572 ntTSL 424.01■■□□□ 1.433e-6■□□□□ 8.7
U2AF1Q01081 SQSTM1-209ENST00000504627 602 ntTSL 524.01■■□□□ 1.433e-6■□□□□ 8.7
U2AF1Q01081 SQSTM1-212ENST00000508284 578 ntTSL 424.01■■□□□ 1.433e-6■□□□□ 8.7
U2AF1Q01081 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.212e-7■□□□□ 8.7
U2AF1Q01081 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC20.77■□□□□ 0.922e-7■□□□□ 8.7
U2AF1Q01081 NFXL1-205ENST00000507131 2664 ntTSL 220.51■□□□□ 0.873e-6■□□□□ 8.7
U2AF1Q01081 SQSTM1-205ENST00000464493 532 ntTSL 419.42■□□□□ 0.73e-6■□□□□ 8.7
U2AF1Q01081 NFXL1-203ENST00000464756 3865 ntTSL 1 (best)16.75■□□□□ 0.273e-6■□□□□ 8.7
U2AF1Q01081 TRAPPC12-217ENST00000473348 491 ntTSL 516.74■□□□□ 0.273e-6■□□□□ 8.7
U2AF1Q01081 NFXL1-201ENST00000329043 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.183e-6■□□□□ 8.7
U2AF1Q01081 SQSTM1-207ENST00000481335 562 ntTSL 416.2■□□□□ 0.183e-6■□□□□ 8.7
U2AF1Q01081 VPS13A-204ENST00000376634 10269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.073e-6■□□□□ 8.7
U2AF1Q01081 NFXL1-206ENST00000507489 3833 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.073e-6■□□□□ 8.7
U2AF1Q01081 SQSTM1-203ENST00000422245 628 ntTSL 415.45■□□□□ 0.063e-6■□□□□ 8.7
U2AF1Q01081 NFXL1-202ENST00000381538 3728 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.033e-6■□□□□ 8.7
U2AF1Q01081 VPS13A-205ENST00000376636 11145 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.143e-6■□□□□ 8.7
U2AF1Q01081 VPS13A-203ENST00000360280 15320 ntAPPRIS P4 TSL 1 (best) BASIC11.34□□□□□ -0.593e-6■□□□□ 8.7
U2AF1Q01081 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.93e-6■□□□□ 8.7
U2AF1Q01081 UTRN-207ENST00000432686 666 ntTSL 38.99□□□□□ -0.973e-6■□□□□ 8.7
U2AF1Q01081 UTRN-209ENST00000455022 633 ntTSL 36.3□□□□□ -1.43e-6■□□□□ 8.7
U2AF1Q01081 UTRN-205ENST00000417142 678 ntTSL 36.11□□□□□ -1.433e-6■□□□□ 8.7
U2AF1Q01081 UTRN-201ENST00000367524 753 ntTSL 34.73□□□□□ -1.653e-6■□□□□ 8.7
U2AF1Q01081 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.972e-6■□□□□ 8.7
U2AF1Q01081 KLHL24-210ENST00000475827 545 ntTSL 421.13■□□□□ 0.972e-6■□□□□ 8.7
U2AF1Q01081 KLHL24-205ENST00000454652 7380 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.222e-6■□□□□ 8.7
U2AF1Q01081 BCL2L2-205ENST00000557236 631 ntTSL 526.55■■□□□ 1.841e-8■□□□□ 8.7
Retrieved 100 of 10,096 protein–RNA pairs in 61.6 ms