RNA–Protein interactions for RNA: ENST00000561359.1

HERC1-213, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 551 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-213ENST00000561359 AEBP2Q6ZN18 517 aaPredicted RBP18.43■□□□□ 0.54
HERC1-213ENST00000561359 CHIC1Q5VXU3 224 aa17.79■□□□□ 0.44
HERC1-213ENST00000561359 SENP3Q9H4L4 574 aaPredicted RBP15.74■□□□□ 0.11
HERC1-213ENST00000561359 PHF23Q9BUL5 403 aaPredicted RBP15.59■□□□□ 0.09
HERC1-213ENST00000561359 FOXD1Q16676 465 aa14.61□□□□□ -0.07
HERC1-213ENST00000561359 PLPPR3Q6T4P5 718 aa14.38□□□□□ -0.11
HERC1-213ENST00000561359 ADRA2BP18089 450 aa13.87□□□□□ -0.19
HERC1-213ENST00000561359 PPP6R1Q9UPN7 881 aa13.85□□□□□ -0.19
HERC1-213ENST00000561359 PIAS4Q8N2W9 510 aaPredicted RBP13.77□□□□□ -0.21
HERC1-213ENST00000561359 NISCHQ9Y2I1 1504 aa13.7□□□□□ -0.22
HERC1-213ENST00000561359 MSH5O43196 834 aa13.61□□□□□ -0.23
HERC1-213ENST00000561359 ABCC9O60706 1549 aa13.08□□□□□ -0.31
HERC1-213ENST00000561359 POTEDQ86YR6 584 aa12.79□□□□□ -0.36
HERC1-213ENST00000561359 DNAJC5BQ9UF47 199 aa12.76□□□□□ -0.37
HERC1-213ENST00000561359 SCAF1Q9H7N4 1312 aaKnown RBP12.74□□□□□ -0.37
HERC1-213ENST00000561359 MAPK8IP2Q13387 824 aaPredicted RBP12.64□□□□□ -0.39
HERC1-213ENST00000561359 PPP4R3CPQ6ZMV5 832 aa12.64□□□□□ -0.39
HERC1-213ENST00000561359 DMRT2Q9Y5R5 561 aa12.5□□□□□ -0.41
HERC1-213ENST00000561359 CCDC180Q9P1Z9 1646 aa12.44□□□□□ -0.42
HERC1-213ENST00000561359 CNKSR2Q8WXI2 1034 aa12.34□□□□□ -0.43
HERC1-213ENST00000561359 NCBP3Q53F19 620 aaKnown RBP12.28□□□□□ -0.44
HERC1-213ENST00000561359 RB1CC1Q8TDY2 1594 aa12.17□□□□□ -0.46
HERC1-213ENST00000561359 PABPN1Q86U42 306 aaKnown RBP eCLIP12.15□□□□□ -0.46
HERC1-213ENST00000561359 RNF216Q9NWF9 866 aaPredicted RBP12.14□□□□□ -0.47
HERC1-213ENST00000561359 HOXD11P31277 338 aaPredicted RBP12.12□□□□□ -0.47
HERC1-213ENST00000561359 DCAF8L1A6NGE4 600 aa12.1□□□□□ -0.47
HERC1-213ENST00000561359 DNAJC5Q9H3Z4 198 aa12.1□□□□□ -0.47
HERC1-213ENST00000561359 KCNA4P22459 653 aa12.05□□□□□ -0.48
HERC1-213ENST00000561359 NPM3O75607 178 aaKnown RBP12.03□□□□□ -0.48
HERC1-213ENST00000561359 DCAF8L2P0C7V8 631 aa11.96□□□□□ -0.49
HERC1-213ENST00000561359 NACADO15069 1562 aa11.95□□□□□ -0.5
HERC1-213ENST00000561359 CECR2Q9BXF3 1484 aa11.83□□□□□ -0.52
HERC1-213ENST00000561359 BICRAQ9NZM4 1560 aa11.79□□□□□ -0.52
HERC1-213ENST00000561359 UNC13AQ9UPW8 1703 aa11.78□□□□□ -0.52
HERC1-213ENST00000561359 CC2D2AQ9P2K1 1620 aa11.73□□□□□ -0.53
HERC1-213ENST00000561359 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.66□□□□□ -0.54
HERC1-213ENST00000561359 SHROOM4Q9ULL8 1493 aa11.59□□□□□ -0.55
HERC1-213ENST00000561359 RNF39Q9H2S5 420 aa11.59□□□□□ -0.55
HERC1-213ENST00000561359 MYO15BQ96JP2 1530 aa11.59□□□□□ -0.55
HERC1-213ENST00000561359 EIF4G1Q04637 1599 aaKnown RBP11.58□□□□□ -0.56
HERC1-213ENST00000561359 CACNB1Q02641 598 aaPredicted RBP11.55□□□□□ -0.56
HERC1-213ENST00000561359 C1QBPQ07021 282 aaKnown RBP11.47□□□□□ -0.57
HERC1-213ENST00000561359 SLC4A1APQ9BWU0 796 aaKnown RBP11.47□□□□□ -0.57
HERC1-213ENST00000561359 CUX2O14529 1486 aa11.45□□□□□ -0.58
HERC1-213ENST00000561359 TRIM41Q8WV44 630 aa11.42□□□□□ -0.58
HERC1-213ENST00000561359 SCRIBQ14160 1630 aa11.39□□□□□ -0.59
HERC1-213ENST00000561359 SLC4A2P04920 1241 aa11.39□□□□□ -0.59
HERC1-213ENST00000561359 U3KPZ7 1027 aaPredicted RBP11.36□□□□□ -0.59
HERC1-213ENST00000561359 ERCC6Q03468 1493 aa11.36□□□□□ -0.59
HERC1-213ENST00000561359 DCAF1Q9Y4B6 1507 aa11.25□□□□□ -0.61
HERC1-213ENST00000561359 ZCCHC6Q5VYS8 1495 aaKnown RBP11.23□□□□□ -0.61
HERC1-213ENST00000561359 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.2□□□□□ -0.62
HERC1-213ENST00000561359 HNRNPUL2Q1KMD3 747 aaKnown RBP11.2□□□□□ -0.62
HERC1-213ENST00000561359 FOXD4L1Q9NU39 408 aa11.18□□□□□ -0.62
HERC1-213ENST00000561359 CAPN15O75808 1086 aa11.17□□□□□ -0.62
HERC1-213ENST00000561359 APLP2Q06481 763 aa11.16□□□□□ -0.62
HERC1-213ENST00000561359 MYCNP04198 464 aaPredicted RBP11.15□□□□□ -0.62
HERC1-213ENST00000561359 SPINK5Q9NQ38 1064 aaPredicted RBP11.14□□□□□ -0.63
HERC1-213ENST00000561359 SAMD1Q6SPF0 538 aaPredicted RBP11.13□□□□□ -0.63
HERC1-213ENST00000561359 NESP48681 1621 aa11.07□□□□□ -0.64
HERC1-213ENST00000561359 NCAPD3P42695 1498 aa11.06□□□□□ -0.64
HERC1-213ENST00000561359 TRHP20396 242 aaPredicted RBP11.05□□□□□ -0.64
HERC1-213ENST00000561359 ZBTB22O15209 634 aa11.04□□□□□ -0.64
HERC1-213ENST00000561359 ZNF219Q9P2Y4 722 aaPredicted RBP11.02□□□□□ -0.65
HERC1-213ENST00000561359 THOC2Q8NI27 1593 aaKnown RBP10.99□□□□□ -0.65
HERC1-213ENST00000561359 ATAD2BQ9ULI0 1458 aa10.97□□□□□ -0.65
HERC1-213ENST00000561359 SMARCA2P51531 1590 aa10.96□□□□□ -0.65
HERC1-213ENST00000561359 DSG3P32926 999 aa10.96□□□□□ -0.65
HERC1-213ENST00000561359 OSCARQ8IYS5 282 aa10.93□□□□□ -0.66
HERC1-213ENST00000561359 ABCB7O75027 752 aa10.91□□□□□ -0.66
HERC1-213ENST00000561359 HMGXB3Q12766 1538 aa10.9□□□□□ -0.66
HERC1-213ENST00000561359 EHMT2Q96KQ7 1210 aa10.9□□□□□ -0.66
HERC1-213ENST00000561359 PDS5BQ9NTI5 1447 aa10.9□□□□□ -0.66
HERC1-213ENST00000561359 LAMC3Q9Y6N6 1575 aa10.86□□□□□ -0.67
HERC1-213ENST00000561359 BAZ1BQ9UIG0 1483 aaKnown RBP10.85□□□□□ -0.67
HERC1-213ENST00000561359 BAZ1AQ9NRL2 1556 aaPredicted RBP10.84□□□□□ -0.67
HERC1-213ENST00000561359 KIF21AQ7Z4S6 1674 aa10.83□□□□□ -0.68
HERC1-213ENST00000561359 ATF5Q9Y2D1 282 aaPredicted RBP10.83□□□□□ -0.68
HERC1-213ENST00000561359 CSRNP3Q8WYN3 585 aa10.81□□□□□ -0.68
HERC1-213ENST00000561359 MRC2Q9UBG0 1479 aa10.8□□□□□ -0.68
HERC1-213ENST00000561359 ATXN8OSP0DMR3 200 aa10.79□□□□□ -0.68
HERC1-213ENST00000561359 POLA2Q14181 598 aa10.78□□□□□ -0.68
HERC1-213ENST00000561359 SMARCA4P51532 1647 aa10.77□□□□□ -0.68
HERC1-213ENST00000561359 WDR62O43379 1518 aa10.74□□□□□ -0.69
HERC1-213ENST00000561359 CADPSQ9ULU8 1353 aa10.74□□□□□ -0.69
HERC1-213ENST00000561359 RIMBP3CA6NJZ7 1639 aa10.73□□□□□ -0.69
HERC1-213ENST00000561359 RIMBP3BA6NNM3 1639 aa10.73□□□□□ -0.69
HERC1-213ENST00000561359 RIMBP3Q9UFD9 1639 aa10.73□□□□□ -0.69
HERC1-213ENST00000561359 CYB5RLQ6IPT4 315 aa10.73□□□□□ -0.69
HERC1-213ENST00000561359 ARHGEF11O15085 1522 aa10.68□□□□□ -0.7
HERC1-213ENST00000561359 CEP164Q9UPV0 1460 aa10.66□□□□□ -0.7
HERC1-213ENST00000561359 PEG3Q9GZU2 1588 aa10.65□□□□□ -0.71
HERC1-213ENST00000561359 FANCD2Q9BXW9 1451 aa10.61□□□□□ -0.71
HERC1-213ENST00000561359 ZBTB12Q9Y330 459 aaPredicted RBP10.6□□□□□ -0.71
HERC1-213ENST00000561359 MROH2BQ7Z745 1585 aa10.56□□□□□ -0.72
HERC1-213ENST00000561359 ARAP1Q96P48 1450 aa10.55□□□□□ -0.72
HERC1-213ENST00000561359 URB2Q14146 1524 aaKnown RBP10.53□□□□□ -0.72
HERC1-213ENST00000561359 ZNF608Q9ULD9 1512 aaPredicted RBP10.5□□□□□ -0.73
HERC1-213ENST00000561359 RBM42Q9BTD8 480 aaKnown RBP10.5□□□□□ -0.73
HERC1-213ENST00000561359 FBLN2P98095 1184 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms