Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CL1P78423 MME-217ENST00000616757 1315 ntTSL 5 BASIC15.25■□□□□ 0.03
CX3CL1P78423 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CL1P78423 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CL1P78423 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC15.25■□□□□ 0.03
CX3CL1P78423 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CL1P78423 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CL1P78423 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CX3CL1P78423 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC15.25■□□□□ 0.03
CX3CL1P78423 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CL1P78423 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC15.25■□□□□ 0.03
CX3CL1P78423 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC15.25■□□□□ 0.03
CX3CL1P78423 RPS15-203ENST00000586096 570 ntTSL 2 BASIC15.25■□□□□ 0.03
CX3CL1P78423 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC15.25■□□□□ 0.03
CX3CL1P78423 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC15.25■□□□□ 0.03
CX3CL1P78423 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CL1P78423 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CX3CL1P78423 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CL1P78423 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC15.25■□□□□ 0.03
CX3CL1P78423 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CL1P78423 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CX3CL1P78423 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CX3CL1P78423 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CL1P78423 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CL1P78423 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC15.25■□□□□ 0.03
CX3CL1P78423 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC15.25■□□□□ 0.03
CX3CL1P78423 TEX21P-204ENST00000641479 1693 ntBASIC15.25■□□□□ 0.03
CX3CL1P78423 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CX3CL1P78423 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CL1P78423 PTGES2-AS1-201ENST00000443493 2100 ntBASIC15.25■□□□□ 0.03
CX3CL1P78423 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CL1P78423 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC15.24■□□□□ 0.03
CX3CL1P78423 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CX3CL1P78423 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC15.24■□□□□ 0.03
CX3CL1P78423 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CX3CL1P78423 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC15.24■□□□□ 0.03
CX3CL1P78423 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC15.24■□□□□ 0.03
CX3CL1P78423 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 AC007613.1-201ENST00000572811 2597 ntBASIC15.24■□□□□ 0.03
CX3CL1P78423 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CX3CL1P78423 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
CX3CL1P78423 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC15.24■□□□□ 0.03
CX3CL1P78423 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC15.24■□□□□ 0.03
CX3CL1P78423 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC15.24■□□□□ 0.03
CX3CL1P78423 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC15.24■□□□□ 0.03
CX3CL1P78423 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC15.24■□□□□ 0.03
CX3CL1P78423 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC15.24■□□□□ 0.03
CX3CL1P78423 CR392000.1-201ENST00000624770 1228 ntBASIC15.24■□□□□ 0.03
CX3CL1P78423 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC15.24■□□□□ 0.03
CX3CL1P78423 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 AC141586.3-201ENST00000562166 1838 ntBASIC15.24■□□□□ 0.03
CX3CL1P78423 AL138781.2-201ENST00000617896 1843 ntBASIC15.24■□□□□ 0.03
CX3CL1P78423 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
CX3CL1P78423 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
CX3CL1P78423 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CL1P78423 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CL1P78423 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CL1P78423 BCL2-203ENST00000589955 5011 ntBASIC15.23■□□□□ 0.03
CX3CL1P78423 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CL1P78423 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CL1P78423 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CL1P78423 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC15.23■□□□□ 0.03
CX3CL1P78423 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC15.23■□□□□ 0.03
CX3CL1P78423 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CL1P78423 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC15.23■□□□□ 0.03
CX3CL1P78423 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CL1P78423 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CL1P78423 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CL1P78423 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
CX3CL1P78423 RPS2P55-201ENST00000397318 883 ntBASIC15.23■□□□□ 0.03
CX3CL1P78423 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC15.23■□□□□ 0.03
CX3CL1P78423 SAPCD2P4-201ENST00000424595 1171 ntBASIC15.23■□□□□ 0.03
CX3CL1P78423 AC004980.1-204ENST00000429707 299 ntBASIC15.23■□□□□ 0.03
CX3CL1P78423 PPP1R14BP5-201ENST00000440334 435 ntBASIC15.23■□□□□ 0.03
CX3CL1P78423 AC107956.1-201ENST00000494359 873 ntBASIC15.23■□□□□ 0.03
CX3CL1P78423 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC15.23■□□□□ 0.03
CX3CL1P78423 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC15.23■□□□□ 0.03
CX3CL1P78423 USP36-216ENST00000589424 970 ntTSL 5 BASIC15.23■□□□□ 0.03
CX3CL1P78423 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC15.23■□□□□ 0.03
CX3CL1P78423 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CL1P78423 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms