Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC21.21■□□□□ 0.99
TPM4P67936 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TPM4P67936 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.21■□□□□ 0.99
TPM4P67936 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TPM4P67936 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.21■□□□□ 0.99
TPM4P67936 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.21■□□□□ 0.99
TPM4P67936 AC133552.2-202ENST00000575694 574 ntBASIC21.21■□□□□ 0.99
TPM4P67936 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TPM4P67936 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
TPM4P67936 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC21.21■□□□□ 0.99
TPM4P67936 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TPM4P67936 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC21.21■□□□□ 0.99
TPM4P67936 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
TPM4P67936 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TPM4P67936 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC21.21■□□□□ 0.99
TPM4P67936 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
TPM4P67936 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM4P67936 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM4P67936 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TPM4P67936 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TPM4P67936 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC21.2■□□□□ 0.98
TPM4P67936 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
TPM4P67936 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TPM4P67936 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM4P67936 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.2■□□□□ 0.98
TPM4P67936 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM4P67936 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC21.2■□□□□ 0.98
TPM4P67936 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM4P67936 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
TPM4P67936 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM4P67936 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM4P67936 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC21.2■□□□□ 0.98
TPM4P67936 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
TPM4P67936 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM4P67936 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
TPM4P67936 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM4P67936 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC21.2■□□□□ 0.98
TPM4P67936 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM4P67936 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TPM4P67936 NOC2LP2-201ENST00000407594 1944 ntBASIC21.19■□□□□ 0.98
TPM4P67936 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
TPM4P67936 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM4P67936 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TPM4P67936 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM4P67936 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
TPM4P67936 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM4P67936 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC21.19■□□□□ 0.98
TPM4P67936 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM4P67936 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
TPM4P67936 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TPM4P67936 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TPM4P67936 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.19■□□□□ 0.98
TPM4P67936 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.19■□□□□ 0.98
TPM4P67936 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
TPM4P67936 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC21.19■□□□□ 0.98
TPM4P67936 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
TPM4P67936 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM4P67936 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM4P67936 AC124283.5-201ENST00000624661 1809 ntBASIC21.19■□□□□ 0.98
TPM4P67936 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC21.19■□□□□ 0.98
TPM4P67936 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
TPM4P67936 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.19■□□□□ 0.98
TPM4P67936 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM4P67936 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM4P67936 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM4P67936 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM4P67936 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
TPM4P67936 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TPM4P67936 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM4P67936 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TPM4P67936 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TPM4P67936 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TPM4P67936 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TPM4P67936 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TPM4P67936 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TPM4P67936 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TPM4P67936 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC21.18■□□□□ 0.98
TPM4P67936 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.18■□□□□ 0.98
TPM4P67936 BX276092.2-201ENST00000417668 665 ntBASIC21.18■□□□□ 0.98
TPM4P67936 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TPM4P67936 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.18■□□□□ 0.98
TPM4P67936 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.18■□□□□ 0.98
TPM4P67936 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
TPM4P67936 AC006557.6-201ENST00000623071 864 ntBASIC21.18■□□□□ 0.98
TPM4P67936 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TPM4P67936 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
TPM4P67936 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
TPM4P67936 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC21.18■□□□□ 0.98
TPM4P67936 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TPM4P67936 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TPM4P67936 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
TPM4P67936 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TPM4P67936 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TPM4P67936 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TPM4P67936 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TPM4P67936 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
TPM4P67936 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
TPM4P67936 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
TPM4P67936 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TPM4P67936 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms