Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
RPL39P62891 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
RPL39P62891 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RPL39P62891 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
RPL39P62891 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
RPL39P62891 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
RPL39P62891 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.27
RPL39P62891 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RPL39P62891 KRT17P1-201ENST00000399211 1546 ntBASIC13.39□□□□□ -0.27
RPL39P62891 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RPL39P62891 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RPL39P62891 FEM1AP3-201ENST00000403722 1741 ntBASIC13.39□□□□□ -0.27
RPL39P62891 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RPL39P62891 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
RPL39P62891 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RPL39P62891 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC13.39□□□□□ -0.27
RPL39P62891 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RPL39P62891 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
RPL39P62891 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RPL39P62891 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
RPL39P62891 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
RPL39P62891 SERP1-205ENST00000487153 657 ntTSL 4 BASIC13.39□□□□□ -0.27
RPL39P62891 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
RPL39P62891 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC13.39□□□□□ -0.27
RPL39P62891 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC13.39□□□□□ -0.27
RPL39P62891 NTF6G-201ENST00000591094 616 ntBASIC13.39□□□□□ -0.27
RPL39P62891 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
RPL39P62891 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RPL39P62891 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC13.39□□□□□ -0.27
RPL39P62891 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
RPL39P62891 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RPL39P62891 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC13.39□□□□□ -0.27
RPL39P62891 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RPL39P62891 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
RPL39P62891 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RPL39P62891 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
RPL39P62891 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
RPL39P62891 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC13.39□□□□□ -0.27
RPL39P62891 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
RPL39P62891 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC13.39□□□□□ -0.27
RPL39P62891 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC13.39□□□□□ -0.27
RPL39P62891 COBL-210ENST00000632460 1941 ntTSL 5 BASIC13.39□□□□□ -0.27
RPL39P62891 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
RPL39P62891 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC13.39□□□□□ -0.27
RPL39P62891 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
RPL39P62891 NXN-202ENST00000537628 1340 ntTSL 3 BASIC13.39□□□□□ -0.27
RPL39P62891 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RPL39P62891 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
RPL39P62891 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RPL39P62891 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC13.38□□□□□ -0.27
RPL39P62891 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC13.38□□□□□ -0.27
RPL39P62891 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
RPL39P62891 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
RPL39P62891 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
RPL39P62891 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
RPL39P62891 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RPL39P62891 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC13.38□□□□□ -0.27
RPL39P62891 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC13.38□□□□□ -0.27
RPL39P62891 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC13.38□□□□□ -0.27
RPL39P62891 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RPL39P62891 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
RPL39P62891 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
RPL39P62891 BET1L-204ENST00000410108 637 ntTSL 3 BASIC13.38□□□□□ -0.27
RPL39P62891 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC13.38□□□□□ -0.27
RPL39P62891 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC13.38□□□□□ -0.27
RPL39P62891 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC13.38□□□□□ -0.27
RPL39P62891 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC13.38□□□□□ -0.27
RPL39P62891 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RPL39P62891 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC13.38□□□□□ -0.27
RPL39P62891 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC13.38□□□□□ -0.27
RPL39P62891 AC010980.2-201ENST00000587099 1412 ntBASIC13.38□□□□□ -0.27
RPL39P62891 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC13.38□□□□□ -0.27
RPL39P62891 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
RPL39P62891 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RPL39P62891 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
RPL39P62891 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RPL39P62891 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
RPL39P62891 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RPL39P62891 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
RPL39P62891 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RPL39P62891 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC13.37□□□□□ -0.27
RPL39P62891 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RPL39P62891 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
RPL39P62891 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
RPL39P62891 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
RPL39P62891 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RPL39P62891 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
RPL39P62891 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC13.37□□□□□ -0.27
RPL39P62891 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC13.37□□□□□ -0.27
RPL39P62891 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
RPL39P62891 DUX4L16-201ENST00000555130 1264 ntBASIC13.37□□□□□ -0.27
RPL39P62891 AC137761.2-201ENST00000561729 223 ntBASIC13.37□□□□□ -0.27
RPL39P62891 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC13.37□□□□□ -0.27
RPL39P62891 AC145350.3-201ENST00000569033 163 ntBASIC13.37□□□□□ -0.27
RPL39P62891 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RPL39P62891 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC13.37□□□□□ -0.27
RPL39P62891 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
RPL39P62891 AC083906.6-201ENST00000641366 219 ntBASIC13.37□□□□□ -0.27
RPL39P62891 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
RPL39P62891 EML3-212ENST00000494176 2901 ntTSL 2 BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms