Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXA1P49639 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXA1P49639 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXA1P49639 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXA1P49639 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXA1P49639 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC15.7■□□□□ 0.1
HOXA1P49639 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXA1P49639 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC15.7■□□□□ 0.1
HOXA1P49639 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC15.7■□□□□ 0.1
HOXA1P49639 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXA1P49639 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXA1P49639 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXA1P49639 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HOXA1P49639 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC15.69■□□□□ 0.1
HOXA1P49639 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
HOXA1P49639 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXA1P49639 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXA1P49639 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC15.69■□□□□ 0.1
HOXA1P49639 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
HOXA1P49639 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC15.69■□□□□ 0.1
HOXA1P49639 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.69■□□□□ 0.1
HOXA1P49639 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
HOXA1P49639 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXA1P49639 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 DUX4L16-201ENST00000555130 1264 ntBASIC15.69■□□□□ 0.1
HOXA1P49639 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC15.69■□□□□ 0.1
HOXA1P49639 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC15.69■□□□□ 0.1
HOXA1P49639 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXA1P49639 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC15.69■□□□□ 0.1
HOXA1P49639 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
HOXA1P49639 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
HOXA1P49639 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
HOXA1P49639 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.69■□□□□ 0.1
HOXA1P49639 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC15.69■□□□□ 0.1
HOXA1P49639 TPR-209ENST00000613151 2478 ntTSL 5 BASIC15.69■□□□□ 0.1
HOXA1P49639 AC018695.7-201ENST00000624587 2492 ntBASIC15.69■□□□□ 0.1
HOXA1P49639 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HOXA1P49639 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
HOXA1P49639 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXA1P49639 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXA1P49639 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
HOXA1P49639 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXA1P49639 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
HOXA1P49639 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
HOXA1P49639 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
HOXA1P49639 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXA1P49639 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC15.68■□□□□ 0.1
HOXA1P49639 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
HOXA1P49639 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXA1P49639 AC011767.1-201ENST00000617410 1153 ntBASIC15.68■□□□□ 0.1
HOXA1P49639 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
HOXA1P49639 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.68■□□□□ 0.1
HOXA1P49639 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
HOXA1P49639 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC15.68■□□□□ 0.1
HOXA1P49639 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC15.68■□□□□ 0.1
HOXA1P49639 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
HOXA1P49639 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HOXA1P49639 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms