Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 AL356652.1-201ENST00000615962 565 ntBASIC14.25□□□□□ -0.13
HLA-DQA1P01909 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 NT5C3AP1-201ENST00000394500 1012 ntBASIC14.24□□□□□ -0.13
HLA-DQA1P01909 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 AL358852.1-201ENST00000623174 1268 ntBASIC14.24□□□□□ -0.13
HLA-DQA1P01909 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DQA1P01909 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 GUK1-205ENST00000366722 850 ntTSL 3 BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 SAPCD2P1-201ENST00000395413 1184 ntBASIC14.23□□□□□ -0.13
HLA-DQA1P01909 SLC25A6P5-201ENST00000435663 894 ntBASIC14.23□□□□□ -0.13
HLA-DQA1P01909 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 LGR4-203ENST00000480977 492 ntTSL 2 BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DQA1P01909 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC14.22□□□□□ -0.13
HLA-DQA1P01909 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DQA1P01909 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DQA1P01909 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DQA1P01909 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DQA1P01909 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC14.22□□□□□ -0.13
HLA-DQA1P01909 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
HLA-DQA1P01909 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms