Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SIX3O95343 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SIX3O95343 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.52■□□□□ 0.55
SIX3O95343 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.52■□□□□ 0.55
SIX3O95343 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
SIX3O95343 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SIX3O95343 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.52■□□□□ 0.55
SIX3O95343 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
SIX3O95343 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SIX3O95343 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SIX3O95343 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SIX3O95343 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SIX3O95343 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX3O95343 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SIX3O95343 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX3O95343 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.51■□□□□ 0.55
SIX3O95343 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
SIX3O95343 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX3O95343 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.51■□□□□ 0.55
SIX3O95343 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
SIX3O95343 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX3O95343 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.51■□□□□ 0.55
SIX3O95343 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX3O95343 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX3O95343 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SIX3O95343 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.51■□□□□ 0.55
SIX3O95343 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.51■□□□□ 0.55
SIX3O95343 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.51■□□□□ 0.55
SIX3O95343 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.51■□□□□ 0.55
SIX3O95343 RN7SL471P-201ENST00000580476 299 ntBASIC18.51■□□□□ 0.55
SIX3O95343 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.51■□□□□ 0.55
SIX3O95343 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.51■□□□□ 0.55
SIX3O95343 AC006058.3-201ENST00000606217 1069 ntBASIC18.51■□□□□ 0.55
SIX3O95343 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SIX3O95343 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SIX3O95343 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX3O95343 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.51■□□□□ 0.55
SIX3O95343 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SIX3O95343 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.51■□□□□ 0.55
SIX3O95343 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SIX3O95343 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.5■□□□□ 0.55
SIX3O95343 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
SIX3O95343 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX3O95343 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SIX3O95343 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX3O95343 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX3O95343 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX3O95343 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SIX3O95343 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX3O95343 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.5■□□□□ 0.55
SIX3O95343 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.5■□□□□ 0.55
SIX3O95343 AC133681.1-201ENST00000465482 601 ntBASIC18.5■□□□□ 0.55
SIX3O95343 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SIX3O95343 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.5■□□□□ 0.55
SIX3O95343 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
SIX3O95343 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX3O95343 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX3O95343 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX3O95343 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX3O95343 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX3O95343 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX3O95343 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SIX3O95343 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX3O95343 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SIX3O95343 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SIX3O95343 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.49■□□□□ 0.55
SIX3O95343 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.49■□□□□ 0.55
SIX3O95343 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.49■□□□□ 0.55
SIX3O95343 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SIX3O95343 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
SIX3O95343 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX3O95343 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
SIX3O95343 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.49■□□□□ 0.55
SIX3O95343 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.49■□□□□ 0.55
SIX3O95343 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX3O95343 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SIX3O95343 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
SIX3O95343 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SIX3O95343 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.49■□□□□ 0.55
SIX3O95343 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX3O95343 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.49■□□□□ 0.55
SIX3O95343 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.49■□□□□ 0.55
SIX3O95343 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.49■□□□□ 0.55
SIX3O95343 AC110285.5-201ENST00000611501 352 ntBASIC18.49■□□□□ 0.55
SIX3O95343 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.49■□□□□ 0.55
SIX3O95343 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX3O95343 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX3O95343 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX3O95343 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.49■□□□□ 0.55
SIX3O95343 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.49■□□□□ 0.55
SIX3O95343 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX3O95343 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.49■□□□□ 0.55
SIX3O95343 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.49■□□□□ 0.55
SIX3O95343 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX3O95343 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.49■□□□□ 0.55
SIX3O95343 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX3O95343 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
SIX3O95343 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.49■□□□□ 0.55
SIX3O95343 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX3O95343 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms