Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF40O75150 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF40O75150 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF40O75150 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF40O75150 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF40O75150 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF40O75150 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF40O75150 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF40O75150 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF40O75150 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF40O75150 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF40O75150 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF40O75150 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.4■□□□□ 0.86
RNF40O75150 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
RNF40O75150 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF40O75150 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF40O75150 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF40O75150 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
RNF40O75150 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF40O75150 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.4■□□□□ 0.86
RNF40O75150 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF40O75150 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF40O75150 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF40O75150 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF40O75150 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.4■□□□□ 0.86
RNF40O75150 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF40O75150 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF40O75150 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF40O75150 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF40O75150 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF40O75150 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.86
RNF40O75150 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF40O75150 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF40O75150 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.39■□□□□ 0.85
RNF40O75150 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
RNF40O75150 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF40O75150 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
RNF40O75150 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF40O75150 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF40O75150 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
RNF40O75150 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF40O75150 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF40O75150 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.39■□□□□ 0.85
RNF40O75150 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.39■□□□□ 0.85
RNF40O75150 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.39■□□□□ 0.85
RNF40O75150 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.39■□□□□ 0.85
RNF40O75150 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF40O75150 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF40O75150 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF40O75150 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF40O75150 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF40O75150 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF40O75150 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.38■□□□□ 0.85
RNF40O75150 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RNF40O75150 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF40O75150 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF40O75150 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF40O75150 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
RNF40O75150 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RNF40O75150 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF40O75150 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.38■□□□□ 0.85
RNF40O75150 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.38■□□□□ 0.85
RNF40O75150 AC073195.1-201ENST00000607241 877 ntBASIC20.38■□□□□ 0.85
RNF40O75150 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF40O75150 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF40O75150 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RNF40O75150 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF40O75150 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF40O75150 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.38■□□□□ 0.85
RNF40O75150 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF40O75150 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC20.38■□□□□ 0.85
RNF40O75150 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF40O75150 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF40O75150 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF40O75150 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF40O75150 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RNF40O75150 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF40O75150 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.37■□□□□ 0.85
RNF40O75150 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF40O75150 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
RNF40O75150 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF40O75150 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF40O75150 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
RNF40O75150 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RNF40O75150 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RNF40O75150 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF40O75150 TMPOP1-202ENST00000424642 1267 ntBASIC20.37■□□□□ 0.85
RNF40O75150 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.37■□□□□ 0.85
RNF40O75150 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.37■□□□□ 0.85
RNF40O75150 RN7SL850P-201ENST00000579959 291 ntBASIC20.37■□□□□ 0.85
RNF40O75150 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.37■□□□□ 0.85
RNF40O75150 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
RNF40O75150 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
RNF40O75150 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
RNF40O75150 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF40O75150 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.37■□□□□ 0.85
RNF40O75150 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
RNF40O75150 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC20.37■□□□□ 0.85
RNF40O75150 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RNF40O75150 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms