Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
SSX4O60224 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
SSX4O60224 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
SSX4O60224 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.15■□□□□ 0.34
SSX4O60224 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
SSX4O60224 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
SSX4O60224 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSX4O60224 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.14■□□□□ 0.33
SSX4O60224 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSX4O60224 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSX4O60224 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSX4O60224 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
SSX4O60224 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
SSX4O60224 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSX4O60224 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SSX4O60224 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSX4O60224 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSX4O60224 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.14■□□□□ 0.33
SSX4O60224 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
SSX4O60224 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.14■□□□□ 0.33
SSX4O60224 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.14■□□□□ 0.33
SSX4O60224 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SSX4O60224 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSX4O60224 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.14■□□□□ 0.33
SSX4O60224 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
SSX4O60224 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.14■□□□□ 0.33
SSX4O60224 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
SSX4O60224 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SSX4O60224 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.14■□□□□ 0.33
SSX4O60224 AC073912.3-201ENST00000624414 853 ntBASIC17.14■□□□□ 0.33
SSX4O60224 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.14■□□□□ 0.33
SSX4O60224 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSX4O60224 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
SSX4O60224 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.14■□□□□ 0.33
SSX4O60224 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SSX4O60224 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.14■□□□□ 0.33
SSX4O60224 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
SSX4O60224 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSX4O60224 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.14■□□□□ 0.33
SSX4O60224 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSX4O60224 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SSX4O60224 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSX4O60224 DPP3P2-201ENST00000416030 1696 ntBASIC17.13■□□□□ 0.33
SSX4O60224 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSX4O60224 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.13■□□□□ 0.33
SSX4O60224 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.13■□□□□ 0.33
SSX4O60224 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SSX4O60224 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.13■□□□□ 0.33
SSX4O60224 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SSX4O60224 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC17.13■□□□□ 0.33
SSX4O60224 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSX4O60224 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSX4O60224 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
SSX4O60224 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSX4O60224 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SSX4O60224 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.13■□□□□ 0.33
SSX4O60224 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSX4O60224 RER1-204ENST00000378518 522 ntTSL 3 BASIC17.13■□□□□ 0.33
SSX4O60224 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.13■□□□□ 0.33
SSX4O60224 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.13■□□□□ 0.33
SSX4O60224 AC124016.1-201ENST00000609552 612 ntBASIC17.13■□□□□ 0.33
SSX4O60224 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
SSX4O60224 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.13■□□□□ 0.33
SSX4O60224 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
SSX4O60224 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSX4O60224 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.13■□□□□ 0.33
SSX4O60224 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SSX4O60224 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
SSX4O60224 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSX4O60224 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSX4O60224 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SSX4O60224 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SSX4O60224 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSX4O60224 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SSX4O60224 AC006333.2-201ENST00000607957 2099 ntBASIC17.12■□□□□ 0.33
SSX4O60224 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
SSX4O60224 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSX4O60224 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSX4O60224 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.12■□□□□ 0.33
SSX4O60224 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSX4O60224 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSX4O60224 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.12■□□□□ 0.33
SSX4O60224 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.12■□□□□ 0.33
SSX4O60224 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSX4O60224 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.12■□□□□ 0.33
SSX4O60224 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSX4O60224 TNRC18P3-201ENST00000441896 2691 ntBASIC17.12■□□□□ 0.33
SSX4O60224 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSX4O60224 KRASP1-201ENST00000407852 552 ntBASIC17.12■□□□□ 0.33
SSX4O60224 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.12■□□□□ 0.33
SSX4O60224 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.12■□□□□ 0.33
SSX4O60224 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.12■□□□□ 0.33
SSX4O60224 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.12■□□□□ 0.33
SSX4O60224 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.12■□□□□ 0.33
SSX4O60224 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
SSX4O60224 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SSX4O60224 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SSX4O60224 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms