Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC32.83■■■□□ 2.85
CCDC88BA6NC98 KRT8P7-201ENST00000533003 1432 ntBASIC32.83■■■□□ 2.85
CCDC88BA6NC98 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
CCDC88BA6NC98 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
CCDC88BA6NC98 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC32.83■■■□□ 2.85
CCDC88BA6NC98 AC004263.2-201ENST00000617183 678 ntBASIC32.83■■■□□ 2.85
CCDC88BA6NC98 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC32.83■■■□□ 2.85
CCDC88BA6NC98 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC32.83■■■□□ 2.85
CCDC88BA6NC98 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
CCDC88BA6NC98 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
CCDC88BA6NC98 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
CCDC88BA6NC98 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
CCDC88BA6NC98 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
CCDC88BA6NC98 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
CCDC88BA6NC98 AKR1C7P-201ENST00000305623 895 ntBASIC32.82■■■□□ 2.84
CCDC88BA6NC98 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
CCDC88BA6NC98 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
CCDC88BA6NC98 TREX1-205ENST00000625293 1783 ntBASIC32.82■■■□□ 2.84
CCDC88BA6NC98 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC32.82■■■□□ 2.84
CCDC88BA6NC98 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
CCDC88BA6NC98 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
CCDC88BA6NC98 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC32.82■■■□□ 2.84
CCDC88BA6NC98 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
CCDC88BA6NC98 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC32.81■■■□□ 2.84
CCDC88BA6NC98 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
CCDC88BA6NC98 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC32.81■■■□□ 2.84
CCDC88BA6NC98 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
CCDC88BA6NC98 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC32.81■■■□□ 2.84
CCDC88BA6NC98 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
CCDC88BA6NC98 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC32.81■■■□□ 2.84
CCDC88BA6NC98 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC32.81■■■□□ 2.84
CCDC88BA6NC98 Z82202.1-201ENST00000623446 1880 ntBASIC32.81■■■□□ 2.84
CCDC88BA6NC98 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
CCDC88BA6NC98 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC32.81■■■□□ 2.84
CCDC88BA6NC98 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC32.81■■■□□ 2.84
CCDC88BA6NC98 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC32.81■■■□□ 2.84
CCDC88BA6NC98 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC32.81■■■□□ 2.84
CCDC88BA6NC98 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC32.8■■■□□ 2.84
CCDC88BA6NC98 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC32.8■■■□□ 2.84
CCDC88BA6NC98 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC32.8■■■□□ 2.84
CCDC88BA6NC98 AL671883.3-201ENST00000603274 991 ntBASIC32.8■■■□□ 2.84
CCDC88BA6NC98 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC32.8■■■□□ 2.84
CCDC88BA6NC98 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC32.8■■■□□ 2.84
CCDC88BA6NC98 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
CCDC88BA6NC98 AC233702.3-201ENST00000578656 1387 ntBASIC32.8■■■□□ 2.84
CCDC88BA6NC98 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
CCDC88BA6NC98 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC32.8■■■□□ 2.84
CCDC88BA6NC98 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC32.8■■■□□ 2.84
CCDC88BA6NC98 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC32.79■■■□□ 2.84
CCDC88BA6NC98 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC32.79■■■□□ 2.84
CCDC88BA6NC98 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC32.79■■■□□ 2.84
CCDC88BA6NC98 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC32.79■■■□□ 2.84
CCDC88BA6NC98 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
CCDC88BA6NC98 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
CCDC88BA6NC98 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC32.79■■■□□ 2.84
CCDC88BA6NC98 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC32.79■■■□□ 2.84
CCDC88BA6NC98 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
CCDC88BA6NC98 AL022342.1-201ENST00000400363 863 ntBASIC32.79■■■□□ 2.84
CCDC88BA6NC98 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC32.79■■■□□ 2.84
CCDC88BA6NC98 BET1L-206ENST00000486280 665 ntTSL 3 BASIC32.79■■■□□ 2.84
CCDC88BA6NC98 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC32.79■■■□□ 2.84
CCDC88BA6NC98 AC112907.3-201ENST00000577781 2400 ntBASIC32.79■■■□□ 2.84
CCDC88BA6NC98 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
CCDC88BA6NC98 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
CCDC88BA6NC98 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
CCDC88BA6NC98 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
CCDC88BA6NC98 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
CCDC88BA6NC98 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC32.78■■■□□ 2.84
CCDC88BA6NC98 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC32.78■■■□□ 2.84
CCDC88BA6NC98 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
CCDC88BA6NC98 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC32.78■■■□□ 2.84
CCDC88BA6NC98 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC32.78■■■□□ 2.84
CCDC88BA6NC98 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC32.78■■■□□ 2.84
CCDC88BA6NC98 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
CCDC88BA6NC98 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC32.78■■■□□ 2.84
CCDC88BA6NC98 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC32.78■■■□□ 2.84
CCDC88BA6NC98 MRPL3P1-201ENST00000400109 1033 ntBASIC32.78■■■□□ 2.84
CCDC88BA6NC98 AC005332.3-201ENST00000589904 676 ntBASIC32.78■■■□□ 2.84
CCDC88BA6NC98 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
CCDC88BA6NC98 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
CCDC88BA6NC98 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
CCDC88BA6NC98 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC32.77■■■□□ 2.84
CCDC88BA6NC98 LINC00167-201ENST00000530583 1419 ntBASIC32.77■■■□□ 2.84
CCDC88BA6NC98 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
CCDC88BA6NC98 KRT16P4-201ENST00000453883 522 ntBASIC32.77■■■□□ 2.84
CCDC88BA6NC98 AL121772.3-201ENST00000610840 674 ntBASIC32.77■■■□□ 2.84
CCDC88BA6NC98 LINC01006-201ENST00000333319 2292 ntBASIC32.77■■■□□ 2.84
CCDC88BA6NC98 PWWP2AP1-201ENST00000429776 2273 ntBASIC32.77■■■□□ 2.84
CCDC88BA6NC98 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
CCDC88BA6NC98 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC32.77■■■□□ 2.84
CCDC88BA6NC98 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC32.77■■■□□ 2.84
CCDC88BA6NC98 KATNBL1P6-202ENST00000562413 1466 ntBASIC32.76■■■□□ 2.84
CCDC88BA6NC98 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC32.76■■■□□ 2.84
CCDC88BA6NC98 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC32.76■■■□□ 2.84
CCDC88BA6NC98 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC32.76■■■□□ 2.84
CCDC88BA6NC98 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC32.76■■■□□ 2.84
CCDC88BA6NC98 AC091304.2-201ENST00000564639 760 ntBASIC32.76■■■□□ 2.84
CCDC88BA6NC98 AC074051.2-201ENST00000565115 352 ntBASIC32.76■■■□□ 2.84
CCDC88BA6NC98 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC32.76■■■□□ 2.84
CCDC88BA6NC98 AC138894.3-201ENST00000603787 634 ntBASIC32.76■■■□□ 2.84
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms