Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV3S1A0A5B6 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC17.74■□□□□ 0.43
TCRBV3S1A0A5B6 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC17.74■□□□□ 0.43
TCRBV3S1A0A5B6 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.74■□□□□ 0.43
TCRBV3S1A0A5B6 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.74■□□□□ 0.43
TCRBV3S1A0A5B6 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
TCRBV3S1A0A5B6 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV3S1A0A5B6 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV3S1A0A5B6 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.74■□□□□ 0.43
TCRBV3S1A0A5B6 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.74■□□□□ 0.43
TCRBV3S1A0A5B6 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV3S1A0A5B6 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV3S1A0A5B6 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV3S1A0A5B6 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV3S1A0A5B6 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TCRBV3S1A0A5B6 HEIH-201ENST00000623091 1652 ntBASIC17.74■□□□□ 0.43
TCRBV3S1A0A5B6 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
TCRBV3S1A0A5B6 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 AP006587.1-201ENST00000534129 1502 ntBASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 AL499627.1-201ENST00000569373 2188 ntBASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 APTR-203ENST00000430801 583 ntTSL 5 BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 OR10C1-204ENST00000622521 1039 ntBASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 AC099398.1-201ENST00000567919 2776 ntBASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TCRBV3S1A0A5B6 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 TSPY21P-201ENST00000433481 731 ntBASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 AC005829.2-201ENST00000571422 1056 ntBASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 NTF6G-201ENST00000591094 616 ntBASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 WWOX-218ENST00000627394 894 ntTSL 5 BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 AC138028.4-201ENST00000564984 1845 ntBASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TCRBV3S1A0A5B6 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
TCRBV3S1A0A5B6 AC093677.2-201ENST00000600169 1863 ntBASIC17.71■□□□□ 0.43
TCRBV3S1A0A5B6 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
TCRBV3S1A0A5B6 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TCRBV3S1A0A5B6 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TCRBV3S1A0A5B6 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
TCRBV3S1A0A5B6 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TCRBV3S1A0A5B6 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TCRBV3S1A0A5B6 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
TCRBV3S1A0A5B6 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
TCRBV3S1A0A5B6 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.71■□□□□ 0.43
TCRBV3S1A0A5B6 AC124283.5-201ENST00000624661 1809 ntBASIC17.71■□□□□ 0.43
TCRBV3S1A0A5B6 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
TCRBV3S1A0A5B6 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
TCRBV3S1A0A5B6 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.71■□□□□ 0.43
TCRBV3S1A0A5B6 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms