Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 AL354751.1-201ENST00000412768 1863 ntBASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 POU5F1P3-201ENST00000428824 1078 ntBASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.27■□□□□ 0.68
TCRBV7S3A2A0A539 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TCRBV7S3A2A0A539 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TCRBV7S3A2A0A539 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
TCRBV7S3A2A0A539 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TCRBV7S3A2A0A539 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
TCRBV7S3A2A0A539 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TCRBV7S3A2A0A539 KRT8P11-201ENST00000409686 1436 ntBASIC19.26■□□□□ 0.67
TCRBV7S3A2A0A539 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TCRBV7S3A2A0A539 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.26■□□□□ 0.67
TCRBV7S3A2A0A539 AL499627.1-201ENST00000569373 2188 ntBASIC19.26■□□□□ 0.67
TCRBV7S3A2A0A539 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TCRBV7S3A2A0A539 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TCRBV7S3A2A0A539 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TCRBV7S3A2A0A539 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.26■□□□□ 0.67
TCRBV7S3A2A0A539 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.26■□□□□ 0.67
TCRBV7S3A2A0A539 RCC2P6-201ENST00000526625 1557 ntBASIC19.26■□□□□ 0.67
TCRBV7S3A2A0A539 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TCRBV7S3A2A0A539 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TCRBV7S3A2A0A539 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TCRBV7S3A2A0A539 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 RN7SL471P-201ENST00000580476 299 ntBASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 AL133373.2-201ENST00000623187 2828 ntBASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 AC005332.8-201ENST00000622750 2735 ntBASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TCRBV7S3A2A0A539 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 HEIH-201ENST00000623091 1652 ntBASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 AC026471.1-201ENST00000564629 3026 ntBASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 AC073648.6-201ENST00000641589 218 ntBASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.24■□□□□ 0.67
TCRBV7S3A2A0A539 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
TCRBV7S3A2A0A539 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms