Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 MTDHP1-201ENST00000605323 784 ntBASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 AC069544.1-201ENST00000609399 999 ntBASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TRAV3A0A0B4J244 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 AP003097.1-201ENST00000530657 1135 ntBASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 AC004264.1-201ENST00000608354 794 ntBASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 COBL-210ENST00000632460 1941 ntTSL 5 BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC15.25■□□□□ 0.03
TRAV3A0A0B4J244 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 KRT8P41-201ENST00000533985 1514 ntBASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 AL023875.1-201ENST00000640777 796 ntBASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC15.24■□□□□ 0.03
TRAV3A0A0B4J244 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms