Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
TREX1Q9NSU2 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
TREX1Q9NSU2 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TREX1Q9NSU2 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.93■□□□□ 0.62
TREX1Q9NSU2 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
TREX1Q9NSU2 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.92■□□□□ 0.62
TREX1Q9NSU2 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TREX1Q9NSU2 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TREX1Q9NSU2 KRT8P32-201ENST00000512863 1461 ntBASIC18.92■□□□□ 0.62
TREX1Q9NSU2 FSCN1P1-201ENST00000568912 1481 ntBASIC18.92■□□□□ 0.62
TREX1Q9NSU2 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.92■□□□□ 0.62
TREX1Q9NSU2 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
TREX1Q9NSU2 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TREX1Q9NSU2 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TREX1Q9NSU2 RPS2P55-201ENST00000397318 883 ntBASIC18.92■□□□□ 0.62
TREX1Q9NSU2 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.92■□□□□ 0.62
TREX1Q9NSU2 AL158047.1-201ENST00000445918 881 ntBASIC18.92■□□□□ 0.62
TREX1Q9NSU2 AC107956.1-201ENST00000494359 873 ntBASIC18.92■□□□□ 0.62
TREX1Q9NSU2 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TREX1Q9NSU2 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
TREX1Q9NSU2 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.92■□□□□ 0.62
TREX1Q9NSU2 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.92■□□□□ 0.62
TREX1Q9NSU2 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.92■□□□□ 0.62
TREX1Q9NSU2 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.92■□□□□ 0.62
TREX1Q9NSU2 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TREX1Q9NSU2 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TREX1Q9NSU2 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.92■□□□□ 0.62
TREX1Q9NSU2 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TREX1Q9NSU2 AC120498.9-201ENST00000339021 3867 ntBASIC18.92■□□□□ 0.62
TREX1Q9NSU2 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 AC009113.1-201ENST00000570267 2443 ntBASIC18.91■□□□□ 0.62
TREX1Q9NSU2 MTMR9LP-203ENST00000426597 1545 ntBASIC18.91■□□□□ 0.62
TREX1Q9NSU2 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 AC012618.2-201ENST00000428058 849 ntBASIC18.91■□□□□ 0.62
TREX1Q9NSU2 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 AP000692.2-201ENST00000608391 879 ntBASIC18.91■□□□□ 0.62
TREX1Q9NSU2 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TREX1Q9NSU2 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.9■□□□□ 0.62
TREX1Q9NSU2 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 AC116562.2-201ENST00000507042 360 ntBASIC18.9■□□□□ 0.62
TREX1Q9NSU2 AC233702.5-201ENST00000584107 538 ntBASIC18.9■□□□□ 0.62
TREX1Q9NSU2 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
TREX1Q9NSU2 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.89■□□□□ 0.62
TREX1Q9NSU2 AC104581.1-202ENST00000635932 2618 ntBASIC18.89■□□□□ 0.62
TREX1Q9NSU2 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
TREX1Q9NSU2 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
TREX1Q9NSU2 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.89■□□□□ 0.61
TREX1Q9NSU2 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.89■□□□□ 0.61
TREX1Q9NSU2 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.89■□□□□ 0.61
TREX1Q9NSU2 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TREX1Q9NSU2 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
TREX1Q9NSU2 NUDT16P1-203ENST00000513809 620 ntBASIC18.89■□□□□ 0.61
TREX1Q9NSU2 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TREX1Q9NSU2 AC113410.3-201ENST00000623366 203 ntBASIC18.89■□□□□ 0.61
TREX1Q9NSU2 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TREX1Q9NSU2 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.89■□□□□ 0.61
TREX1Q9NSU2 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms