Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS35Q96QK1 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS35Q96QK1 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS35Q96QK1 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS35Q96QK1 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS35Q96QK1 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS35Q96QK1 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS35Q96QK1 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
VPS35Q96QK1 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS35Q96QK1 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS35Q96QK1 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS35Q96QK1 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS35Q96QK1 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS35Q96QK1 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS35Q96QK1 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS35Q96QK1 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
VPS35Q96QK1 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS35Q96QK1 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS35Q96QK1 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS35Q96QK1 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS35Q96QK1 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.81■□□□□ 0.6
VPS35Q96QK1 CCR12P-201ENST00000446203 998 ntBASIC18.81■□□□□ 0.6
VPS35Q96QK1 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS35Q96QK1 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS35Q96QK1 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS35Q96QK1 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VPS35Q96QK1 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.81■□□□□ 0.6
VPS35Q96QK1 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.81■□□□□ 0.6
VPS35Q96QK1 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS35Q96QK1 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS35Q96QK1 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.81■□□□□ 0.6
VPS35Q96QK1 AC145285.6-201ENST00000604632 637 ntBASIC18.81■□□□□ 0.6
VPS35Q96QK1 AC012306.2-201ENST00000609350 630 ntBASIC18.81■□□□□ 0.6
VPS35Q96QK1 AL023803.3-201ENST00000615559 522 ntBASIC18.81■□□□□ 0.6
VPS35Q96QK1 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS35Q96QK1 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS35Q96QK1 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS35Q96QK1 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS35Q96QK1 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS35Q96QK1 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS35Q96QK1 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS35Q96QK1 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS35Q96QK1 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS35Q96QK1 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS35Q96QK1 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS35Q96QK1 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS35Q96QK1 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS35Q96QK1 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS35Q96QK1 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS35Q96QK1 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS35Q96QK1 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS35Q96QK1 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS35Q96QK1 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.8■□□□□ 0.6
VPS35Q96QK1 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS35Q96QK1 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VPS35Q96QK1 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS35Q96QK1 TSPY17P-201ENST00000450329 467 ntBASIC18.8■□□□□ 0.6
VPS35Q96QK1 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS35Q96QK1 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.8■□□□□ 0.6
VPS35Q96QK1 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
VPS35Q96QK1 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS35Q96QK1 AC097493.4-201ENST00000641197 219 ntBASIC18.8■□□□□ 0.6
VPS35Q96QK1 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS35Q96QK1 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS35Q96QK1 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS35Q96QK1 KRT8P3-201ENST00000519669 1449 ntBASIC18.8■□□□□ 0.6
VPS35Q96QK1 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS35Q96QK1 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS35Q96QK1 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS35Q96QK1 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS35Q96QK1 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS35Q96QK1 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS35Q96QK1 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS35Q96QK1 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS35Q96QK1 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS35Q96QK1 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS35Q96QK1 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS35Q96QK1 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS35Q96QK1 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.79■□□□□ 0.6
VPS35Q96QK1 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
VPS35Q96QK1 AC128688.1-201ENST00000487626 519 ntBASIC18.79■□□□□ 0.6
VPS35Q96QK1 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS35Q96QK1 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.79■□□□□ 0.6
VPS35Q96QK1 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS35Q96QK1 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS35Q96QK1 AC116562.4-202ENST00000641738 218 ntBASIC18.79■□□□□ 0.6
VPS35Q96QK1 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS35Q96QK1 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS35Q96QK1 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS35Q96QK1 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS35Q96QK1 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS35Q96QK1 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS35Q96QK1 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS35Q96QK1 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS35Q96QK1 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
VPS35Q96QK1 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS35Q96QK1 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS35Q96QK1 AC092338.2-201ENST00000568827 1415 ntBASIC18.78■□□□□ 0.6
VPS35Q96QK1 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS35Q96QK1 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms