Protein–RNA interactions for Protein: Q96DD0

LRRC39, Leucine-rich repeat-containing protein 39, humanhuman

Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC39Q96DD0 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LRRC39Q96DD0 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRRC39Q96DD0 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRRC39Q96DD0 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LRRC39Q96DD0 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.16■□□□□ 0.66
LRRC39Q96DD0 KRT17P3-201ENST00000420566 1262 ntBASIC19.16■□□□□ 0.66
LRRC39Q96DD0 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LRRC39Q96DD0 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LRRC39Q96DD0 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LRRC39Q96DD0 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.16■□□□□ 0.66
LRRC39Q96DD0 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.16■□□□□ 0.66
LRRC39Q96DD0 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRRC39Q96DD0 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRRC39Q96DD0 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRRC39Q96DD0 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.16■□□□□ 0.66
LRRC39Q96DD0 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
LRRC39Q96DD0 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRRC39Q96DD0 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRRC39Q96DD0 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.16■□□□□ 0.66
LRRC39Q96DD0 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LRRC39Q96DD0 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 HEIH-201ENST00000623091 1652 ntBASIC19.15■□□□□ 0.66
LRRC39Q96DD0 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 AP003097.1-201ENST00000530657 1135 ntBASIC19.15■□□□□ 0.66
LRRC39Q96DD0 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRRC39Q96DD0 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.14■□□□□ 0.66
LRRC39Q96DD0 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
LRRC39Q96DD0 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
LRRC39Q96DD0 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.14■□□□□ 0.66
LRRC39Q96DD0 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LRRC39Q96DD0 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
LRRC39Q96DD0 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 AC069544.1-201ENST00000609399 999 ntBASIC19.14■□□□□ 0.65
LRRC39Q96DD0 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LRRC39Q96DD0 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.13■□□□□ 0.65
LRRC39Q96DD0 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 POU5F1P3-201ENST00000428824 1078 ntBASIC19.13■□□□□ 0.65
LRRC39Q96DD0 KRT16P5-201ENST00000455284 522 ntBASIC19.13■□□□□ 0.65
LRRC39Q96DD0 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 Z85996.1-201ENST00000494644 937 ntBASIC19.13■□□□□ 0.65
LRRC39Q96DD0 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 RCC2P6-201ENST00000526625 1557 ntBASIC19.13■□□□□ 0.65
LRRC39Q96DD0 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRRC39Q96DD0 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms