Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 C1QL1P1-201ENST00000568105 661 ntBASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.22■□□□□ 0.51
CLHC1Q8NHS4 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 ID1-201ENST00000376105 1233 ntBASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 MTDHP1-201ENST00000605323 784 ntBASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.21■□□□□ 0.51
CLHC1Q8NHS4 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
CLHC1Q8NHS4 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
CLHC1Q8NHS4 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
CLHC1Q8NHS4 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.5
CLHC1Q8NHS4 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
CLHC1Q8NHS4 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 KRT17P3-201ENST00000420566 1262 ntBASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 AL160286.2-201ENST00000567150 934 ntBASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 AC004264.1-201ENST00000608354 794 ntBASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 AL023875.1-201ENST00000640777 796 ntBASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 AC005082.1-201ENST00000413042 2259 ntBASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLHC1Q8NHS4 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.19■□□□□ 0.5
CLHC1Q8NHS4 Z98044.1-201ENST00000632503 1764 ntBASIC18.19■□□□□ 0.5
CLHC1Q8NHS4 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms