Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
RFX4Q33E94 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
RFX4Q33E94 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFX4Q33E94 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC17.65■□□□□ 0.42
RFX4Q33E94 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC17.65■□□□□ 0.42
RFX4Q33E94 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC17.65■□□□□ 0.42
RFX4Q33E94 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC17.65■□□□□ 0.42
RFX4Q33E94 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RFX4Q33E94 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFX4Q33E94 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RFX4Q33E94 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.65■□□□□ 0.42
RFX4Q33E94 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.65■□□□□ 0.42
RFX4Q33E94 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC17.65■□□□□ 0.42
RFX4Q33E94 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
RFX4Q33E94 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFX4Q33E94 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFX4Q33E94 TFP1-202ENST00000475455 1573 ntBASIC17.65■□□□□ 0.42
RFX4Q33E94 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
RFX4Q33E94 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFX4Q33E94 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.65■□□□□ 0.42
RFX4Q33E94 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFX4Q33E94 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RFX4Q33E94 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.65■□□□□ 0.42
RFX4Q33E94 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
RFX4Q33E94 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
RFX4Q33E94 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.64■□□□□ 0.42
RFX4Q33E94 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
RFX4Q33E94 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
RFX4Q33E94 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
RFX4Q33E94 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.64■□□□□ 0.41
RFX4Q33E94 FEM1AP3-201ENST00000403722 1741 ntBASIC17.64■□□□□ 0.41
RFX4Q33E94 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.64■□□□□ 0.41
RFX4Q33E94 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RFX4Q33E94 AC104417.2-201ENST00000562989 1793 ntBASIC17.64■□□□□ 0.41
RFX4Q33E94 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFX4Q33E94 AC073592.3-201ENST00000625118 1834 ntBASIC17.64■□□□□ 0.41
RFX4Q33E94 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFX4Q33E94 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFX4Q33E94 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.64■□□□□ 0.41
RFX4Q33E94 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.41
RFX4Q33E94 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC17.64■□□□□ 0.41
RFX4Q33E94 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
RFX4Q33E94 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC17.64■□□□□ 0.41
RFX4Q33E94 AC080038.1-201ENST00000611274 1154 ntBASIC17.64■□□□□ 0.41
RFX4Q33E94 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC17.64■□□□□ 0.41
RFX4Q33E94 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFX4Q33E94 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFX4Q33E94 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFX4Q33E94 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFX4Q33E94 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
RFX4Q33E94 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RFX4Q33E94 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.64■□□□□ 0.41
RFX4Q33E94 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.63■□□□□ 0.41
RFX4Q33E94 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RFX4Q33E94 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.63■□□□□ 0.41
RFX4Q33E94 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.63■□□□□ 0.41
RFX4Q33E94 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX4Q33E94 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RFX4Q33E94 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RFX4Q33E94 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX4Q33E94 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX4Q33E94 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
RFX4Q33E94 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC17.63■□□□□ 0.41
RFX4Q33E94 AF201337.1-201ENST00000520239 748 ntBASIC17.63■□□□□ 0.41
RFX4Q33E94 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RFX4Q33E94 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC17.63■□□□□ 0.41
RFX4Q33E94 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RFX4Q33E94 AC105036.2-201ENST00000569468 176 ntBASIC17.63■□□□□ 0.41
RFX4Q33E94 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC17.63■□□□□ 0.41
RFX4Q33E94 MARS-234ENST00000630571 216 ntTSL 5 BASIC17.63■□□□□ 0.41
RFX4Q33E94 MARS-235ENST00000630803 183 ntTSL 3 BASIC17.63■□□□□ 0.41
RFX4Q33E94 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.63■□□□□ 0.41
RFX4Q33E94 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RFX4Q33E94 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RFX4Q33E94 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RFX4Q33E94 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX4Q33E94 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.63■□□□□ 0.41
RFX4Q33E94 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
RFX4Q33E94 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFX4Q33E94 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.62■□□□□ 0.41
RFX4Q33E94 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFX4Q33E94 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFX4Q33E94 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFX4Q33E94 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFX4Q33E94 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFX4Q33E94 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RFX4Q33E94 SDHAP1-207ENST00000440850 2000 ntBASIC17.62■□□□□ 0.41
RFX4Q33E94 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RFX4Q33E94 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC17.62■□□□□ 0.41
RFX4Q33E94 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
RFX4Q33E94 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
RFX4Q33E94 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
RFX4Q33E94 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
RFX4Q33E94 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC17.62■□□□□ 0.41
RFX4Q33E94 AL390719.1-204ENST00000412397 1219 ntBASIC17.62■□□□□ 0.41
RFX4Q33E94 BX276092.2-201ENST00000417668 665 ntBASIC17.62■□□□□ 0.41
RFX4Q33E94 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC17.62■□□□□ 0.41
RFX4Q33E94 PHB2-213ENST00000546111 858 ntTSL 2 BASIC17.62■□□□□ 0.41
RFX4Q33E94 AC073111.5-205ENST00000641717 521 ntBASIC17.62■□□□□ 0.41
RFX4Q33E94 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms