Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC11.76□□□□□ -0.53
HSPG2P98160 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
HSPG2P98160 PNKD-204ENST00000436005 978 ntTSL 5 BASIC11.75□□□□□ -0.53
HSPG2P98160 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HSPG2P98160 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HSPG2P98160 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HSPG2P98160 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HSPG2P98160 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
HSPG2P98160 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC11.75□□□□□ -0.53
HSPG2P98160 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HSPG2P98160 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC11.75□□□□□ -0.53
HSPG2P98160 MYB-221ENST00000527615 2381 ntTSL 5 BASIC11.75□□□□□ -0.53
HSPG2P98160 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HSPG2P98160 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
HSPG2P98160 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC11.75□□□□□ -0.53
HSPG2P98160 RN7SL606P-201ENST00000472779 293 ntBASIC11.75□□□□□ -0.53
HSPG2P98160 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC11.75□□□□□ -0.53
HSPG2P98160 NME1-207ENST00000480143 964 ntTSL 2 BASIC11.75□□□□□ -0.53
HSPG2P98160 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HSPG2P98160 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC11.75□□□□□ -0.53
HSPG2P98160 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC11.75□□□□□ -0.53
HSPG2P98160 TREX1-205ENST00000625293 1783 ntBASIC11.75□□□□□ -0.53
HSPG2P98160 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HSPG2P98160 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
HSPG2P98160 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC11.75□□□□□ -0.53
HSPG2P98160 CCS-201ENST00000310190 942 ntTSL 5 BASIC11.75□□□□□ -0.53
HSPG2P98160 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC11.75□□□□□ -0.53
HSPG2P98160 DNAJB3-201ENST00000446806 729 ntBASIC11.75□□□□□ -0.53
HSPG2P98160 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC11.75□□□□□ -0.53
HSPG2P98160 AC132008.2-207ENST00000454517 770 ntBASIC11.75□□□□□ -0.53
HSPG2P98160 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC11.75□□□□□ -0.53
HSPG2P98160 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC11.75□□□□□ -0.53
HSPG2P98160 AC009533.2-201ENST00000543664 586 ntBASIC11.75□□□□□ -0.53
HSPG2P98160 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC11.75□□□□□ -0.53
HSPG2P98160 AC090616.6-201ENST00000582640 721 ntBASIC11.75□□□□□ -0.53
HSPG2P98160 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HSPG2P98160 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HSPG2P98160 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
HSPG2P98160 AL049796.1-201ENST00000565336 1766 ntBASIC11.75□□□□□ -0.53
HSPG2P98160 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HSPG2P98160 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HSPG2P98160 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
HSPG2P98160 ATP6V0CP3-201ENST00000417255 467 ntBASIC11.74□□□□□ -0.53
HSPG2P98160 SPCS2P1-201ENST00000561636 679 ntBASIC11.74□□□□□ -0.53
HSPG2P98160 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 BID-203ENST00000399765 1879 ntTSL 2 BASIC11.74□□□□□ -0.53
HSPG2P98160 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC11.74□□□□□ -0.53
HSPG2P98160 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC11.74□□□□□ -0.53
HSPG2P98160 KLK8-202ENST00000320838 456 ntTSL 5 BASIC11.74□□□□□ -0.53
HSPG2P98160 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
HSPG2P98160 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 PUDP-206ENST00000540122 825 ntTSL 2 BASIC11.74□□□□□ -0.53
HSPG2P98160 AC104417.2-201ENST00000562989 1793 ntBASIC11.74□□□□□ -0.53
HSPG2P98160 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC11.74□□□□□ -0.53
HSPG2P98160 RPS8P6-201ENST00000426177 609 ntBASIC11.74□□□□□ -0.53
HSPG2P98160 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC11.74□□□□□ -0.53
HSPG2P98160 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC11.74□□□□□ -0.53
HSPG2P98160 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC11.74□□□□□ -0.53
HSPG2P98160 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC11.74□□□□□ -0.53
HSPG2P98160 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC11.74□□□□□ -0.53
HSPG2P98160 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
HSPG2P98160 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC11.74□□□□□ -0.53
HSPG2P98160 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC11.74□□□□□ -0.53
HSPG2P98160 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC11.74□□□□□ -0.53
HSPG2P98160 FEM1AP4-201ENST00000443167 1987 ntBASIC11.74□□□□□ -0.53
HSPG2P98160 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC11.74□□□□□ -0.53
HSPG2P98160 MIR3687-2-201ENST00000577708 61 ntBASIC11.74□□□□□ -0.53
HSPG2P98160 MIR3687-1-201ENST00000614492 61 ntBASIC11.74□□□□□ -0.53
HSPG2P98160 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HSPG2P98160 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HSPG2P98160 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC11.73□□□□□ -0.53
HSPG2P98160 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HSPG2P98160 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HSPG2P98160 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HSPG2P98160 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HSPG2P98160 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HSPG2P98160 AL591424.1-201ENST00000442569 1213 ntBASIC11.73□□□□□ -0.53
HSPG2P98160 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC11.73□□□□□ -0.53
HSPG2P98160 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
HSPG2P98160 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC11.73□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms