Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC31.8■■■□□ 2.68
CUX1P39880 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC31.79■■■□□ 2.68
CUX1P39880 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
CUX1P39880 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC31.79■■■□□ 2.68
CUX1P39880 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
CUX1P39880 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
CUX1P39880 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC31.79■■■□□ 2.68
CUX1P39880 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC31.79■■■□□ 2.68
CUX1P39880 TEX21P-204ENST00000641479 1693 ntBASIC31.79■■■□□ 2.68
CUX1P39880 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
CUX1P39880 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC31.79■■■□□ 2.68
CUX1P39880 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
CUX1P39880 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC31.79■■■□□ 2.68
CUX1P39880 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
CUX1P39880 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC31.78■■■□□ 2.68
CUX1P39880 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
CUX1P39880 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC31.78■■■□□ 2.68
CUX1P39880 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC31.78■■■□□ 2.68
CUX1P39880 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC31.78■■■□□ 2.68
CUX1P39880 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
CUX1P39880 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
CUX1P39880 KRT18P23-201ENST00000435622 1283 ntBASIC31.78■■■□□ 2.68
CUX1P39880 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC31.78■■■□□ 2.68
CUX1P39880 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC31.78■■■□□ 2.68
CUX1P39880 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC31.78■■■□□ 2.68
CUX1P39880 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC31.78■■■□□ 2.68
CUX1P39880 GPALPP1-207ENST00000611650 899 ntBASIC31.78■■■□□ 2.68
CUX1P39880 AL592071.1-201ENST00000611956 408 ntBASIC31.78■■■□□ 2.68
CUX1P39880 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
CUX1P39880 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
CUX1P39880 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
CUX1P39880 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC31.77■■■□□ 2.68
CUX1P39880 USP39-204ENST00000409766 2033 ntTSL 2 BASIC31.77■■■□□ 2.68
CUX1P39880 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
CUX1P39880 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC31.77■■■□□ 2.68
CUX1P39880 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC31.77■■■□□ 2.68
CUX1P39880 IGHV3-47-201ENST00000425060 335 ntBASIC31.77■■■□□ 2.68
CUX1P39880 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC31.77■■■□□ 2.68
CUX1P39880 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC31.77■■■□□ 2.68
CUX1P39880 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
CUX1P39880 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC31.77■■■□□ 2.68
CUX1P39880 GPR32P1-201ENST00000601788 811 ntBASIC31.77■■■□□ 2.68
CUX1P39880 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
CUX1P39880 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC31.77■■■□□ 2.68
CUX1P39880 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
CUX1P39880 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
CUX1P39880 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
CUX1P39880 TP73-202ENST00000354437 2140 ntTSL 5 BASIC31.76■■■□□ 2.68
CUX1P39880 AC008556.1-201ENST00000610908 2040 ntBASIC31.76■■■□□ 2.68
CUX1P39880 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC31.76■■■□□ 2.68
CUX1P39880 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC31.76■■■□□ 2.68
CUX1P39880 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
CUX1P39880 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC31.76■■■□□ 2.68
CUX1P39880 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
CUX1P39880 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC31.76■■■□□ 2.68
CUX1P39880 AL353801.3-201ENST00000609898 542 ntBASIC31.76■■■□□ 2.68
CUX1P39880 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
CUX1P39880 AC120114.3-201ENST00000611923 658 ntBASIC31.76■■■□□ 2.68
CUX1P39880 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
CUX1P39880 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC31.76■■■□□ 2.67
CUX1P39880 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC31.76■■■□□ 2.67
CUX1P39880 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
CUX1P39880 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
CUX1P39880 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC31.75■■■□□ 2.67
CUX1P39880 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
CUX1P39880 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
CUX1P39880 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC31.75■■■□□ 2.67
CUX1P39880 AC091607.1-201ENST00000490318 1060 ntBASIC31.75■■■□□ 2.67
CUX1P39880 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
CUX1P39880 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC31.75■■■□□ 2.67
CUX1P39880 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
CUX1P39880 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC31.75■■■□□ 2.67
CUX1P39880 MED17-221ENST00000639724 2317 ntTSL 5 BASIC31.75■■■□□ 2.67
CUX1P39880 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC31.75■■■□□ 2.67
CUX1P39880 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC31.75■■■□□ 2.67
CUX1P39880 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC31.75■■■□□ 2.67
CUX1P39880 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC31.75■■■□□ 2.67
CUX1P39880 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC31.75■■■□□ 2.67
CUX1P39880 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC31.75■■■□□ 2.67
CUX1P39880 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC31.75■■■□□ 2.67
CUX1P39880 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC31.75■■■□□ 2.67
CUX1P39880 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC31.74■■■□□ 2.67
CUX1P39880 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC31.74■■■□□ 2.67
CUX1P39880 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC31.74■■■□□ 2.67
CUX1P39880 AC092667.1-201ENST00000434301 2586 ntBASIC31.74■■■□□ 2.67
CUX1P39880 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
CUX1P39880 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
CUX1P39880 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
CUX1P39880 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC31.74■■■□□ 2.67
CUX1P39880 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC31.74■■■□□ 2.67
CUX1P39880 CALM3-211ENST00000598871 561 ntTSL 4 BASIC31.74■■■□□ 2.67
CUX1P39880 AC099336.1-202ENST00000602961 463 ntBASIC31.74■■■□□ 2.67
CUX1P39880 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC31.74■■■□□ 2.67
CUX1P39880 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
CUX1P39880 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
CUX1P39880 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC31.73■■■□□ 2.67
CUX1P39880 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CUX1P39880 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
CUX1P39880 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CUX1P39880 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms