Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.88■□□□□ 0.61
MSH3P20585 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.88■□□□□ 0.61
MSH3P20585 HCG11-201ENST00000411553 5696 ntBASIC18.88■□□□□ 0.61
MSH3P20585 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.88■□□□□ 0.61
MSH3P20585 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.88■□□□□ 0.61
MSH3P20585 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.88■□□□□ 0.61
MSH3P20585 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.88■□□□□ 0.61
MSH3P20585 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.88■□□□□ 0.61
MSH3P20585 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.88■□□□□ 0.61
MSH3P20585 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH3P20585 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MSH3P20585 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH3P20585 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MSH3P20585 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.87■□□□□ 0.61
MSH3P20585 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH3P20585 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
MSH3P20585 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.87■□□□□ 0.61
MSH3P20585 MFAP1P1-201ENST00000442257 1255 ntBASIC18.87■□□□□ 0.61
MSH3P20585 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.87■□□□□ 0.61
MSH3P20585 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.87■□□□□ 0.61
MSH3P20585 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.87■□□□□ 0.61
MSH3P20585 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.87■□□□□ 0.61
MSH3P20585 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.87■□□□□ 0.61
MSH3P20585 AC079598.2-202ENST00000546624 1451 ntBASIC18.87■□□□□ 0.61
MSH3P20585 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.87■□□□□ 0.61
MSH3P20585 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH3P20585 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH3P20585 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MSH3P20585 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.87■□□□□ 0.61
MSH3P20585 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MSH3P20585 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH3P20585 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.87■□□□□ 0.61
MSH3P20585 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
MSH3P20585 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH3P20585 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH3P20585 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH3P20585 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MSH3P20585 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MSH3P20585 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSH3P20585 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSH3P20585 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
MSH3P20585 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.86■□□□□ 0.61
MSH3P20585 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
MSH3P20585 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
MSH3P20585 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.86■□□□□ 0.61
MSH3P20585 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSH3P20585 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.86■□□□□ 0.61
MSH3P20585 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSH3P20585 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.86■□□□□ 0.61
MSH3P20585 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.86■□□□□ 0.61
MSH3P20585 MIR1238-201ENST00000408483 83 ntBASIC18.86■□□□□ 0.61
MSH3P20585 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSH3P20585 TSPY15P-201ENST00000457163 923 ntBASIC18.86■□□□□ 0.61
MSH3P20585 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.86■□□□□ 0.61
MSH3P20585 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
MSH3P20585 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.86■□□□□ 0.61
MSH3P20585 CKBP1-201ENST00000565489 1086 ntBASIC18.86■□□□□ 0.61
MSH3P20585 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSH3P20585 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSH3P20585 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.86■□□□□ 0.61
MSH3P20585 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSH3P20585 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSH3P20585 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
MSH3P20585 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH3P20585 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH3P20585 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH3P20585 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.85■□□□□ 0.61
MSH3P20585 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH3P20585 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MSH3P20585 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
MSH3P20585 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH3P20585 AC096733.2-201ENST00000609937 1394 ntBASIC18.85■□□□□ 0.61
MSH3P20585 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MSH3P20585 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH3P20585 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH3P20585 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH3P20585 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH3P20585 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.85■□□□□ 0.61
MSH3P20585 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.85■□□□□ 0.61
MSH3P20585 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH3P20585 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.85■□□□□ 0.61
MSH3P20585 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.85■□□□□ 0.61
MSH3P20585 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.85■□□□□ 0.61
MSH3P20585 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.85■□□□□ 0.61
MSH3P20585 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH3P20585 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.85■□□□□ 0.61
MSH3P20585 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH3P20585 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms