Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
APOEP02649 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
APOEP02649 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
APOEP02649 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.86■□□□□ 0.77
APOEP02649 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
APOEP02649 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.86■□□□□ 0.77
APOEP02649 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.86■□□□□ 0.77
APOEP02649 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
APOEP02649 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.86■□□□□ 0.77
APOEP02649 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
APOEP02649 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
APOEP02649 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.86■□□□□ 0.77
APOEP02649 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
APOEP02649 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
APOEP02649 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
APOEP02649 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
APOEP02649 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
APOEP02649 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.86■□□□□ 0.77
APOEP02649 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
APOEP02649 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.86■□□□□ 0.77
APOEP02649 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.86■□□□□ 0.77
APOEP02649 KRT8P11-201ENST00000409686 1436 ntBASIC19.85■□□□□ 0.77
APOEP02649 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.85■□□□□ 0.77
APOEP02649 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
APOEP02649 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.85■□□□□ 0.77
APOEP02649 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
APOEP02649 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.85■□□□□ 0.77
APOEP02649 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.85■□□□□ 0.77
APOEP02649 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.85■□□□□ 0.77
APOEP02649 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
APOEP02649 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
APOEP02649 AC087499.1-201ENST00000418141 1075 ntBASIC19.85■□□□□ 0.77
APOEP02649 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.85■□□□□ 0.77
APOEP02649 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
APOEP02649 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.85■□□□□ 0.77
APOEP02649 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.85■□□□□ 0.77
APOEP02649 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.85■□□□□ 0.77
APOEP02649 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.85■□□□□ 0.77
APOEP02649 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
APOEP02649 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
APOEP02649 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.85■□□□□ 0.77
APOEP02649 AC004408.2-201ENST00000623613 2777 ntBASIC19.85■□□□□ 0.77
APOEP02649 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.85■□□□□ 0.77
APOEP02649 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
APOEP02649 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
APOEP02649 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
APOEP02649 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
APOEP02649 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.85■□□□□ 0.77
APOEP02649 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
APOEP02649 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
APOEP02649 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
APOEP02649 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
APOEP02649 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
APOEP02649 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
APOEP02649 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
APOEP02649 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.84■□□□□ 0.77
APOEP02649 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.84■□□□□ 0.77
APOEP02649 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.84■□□□□ 0.77
APOEP02649 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.84■□□□□ 0.77
APOEP02649 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.84■□□□□ 0.77
APOEP02649 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
APOEP02649 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.84■□□□□ 0.77
APOEP02649 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.84■□□□□ 0.77
APOEP02649 CKBP1-201ENST00000565489 1086 ntBASIC19.84■□□□□ 0.77
APOEP02649 C2orf69P3-201ENST00000565542 1120 ntBASIC19.84■□□□□ 0.77
APOEP02649 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.84■□□□□ 0.77
APOEP02649 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
APOEP02649 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
APOEP02649 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
APOEP02649 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
APOEP02649 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
APOEP02649 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
APOEP02649 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
APOEP02649 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
APOEP02649 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
APOEP02649 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
APOEP02649 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.83■□□□□ 0.77
APOEP02649 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
APOEP02649 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
APOEP02649 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.83■□□□□ 0.77
APOEP02649 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.83■□□□□ 0.77
APOEP02649 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
APOEP02649 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.83■□□□□ 0.77
APOEP02649 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
APOEP02649 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
APOEP02649 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
APOEP02649 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.83■□□□□ 0.77
APOEP02649 TSPY23P-201ENST00000440136 739 ntBASIC19.83■□□□□ 0.77
APOEP02649 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.83■□□□□ 0.77
APOEP02649 NAPSB-206ENST00000562112 1266 ntBASIC19.83■□□□□ 0.77
APOEP02649 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.83■□□□□ 0.77
APOEP02649 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
APOEP02649 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
APOEP02649 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.83■□□□□ 0.76
APOEP02649 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
APOEP02649 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.83■□□□□ 0.76
APOEP02649 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
APOEP02649 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
APOEP02649 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
APOEP02649 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms