Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SSX4O60224 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSX4O60224 BICD1-207ENST00000551848 1962 ntBASIC17.17■□□□□ 0.34
SSX4O60224 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSX4O60224 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSX4O60224 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
SSX4O60224 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSX4O60224 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSX4O60224 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SSX4O60224 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSX4O60224 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SSX4O60224 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.17■□□□□ 0.34
SSX4O60224 SERP1-205ENST00000487153 657 ntTSL 4 BASIC17.17■□□□□ 0.34
SSX4O60224 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.17■□□□□ 0.34
SSX4O60224 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC17.17■□□□□ 0.34
SSX4O60224 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.17■□□□□ 0.34
SSX4O60224 KLF2-202ENST00000592003 564 ntTSL 3 BASIC17.17■□□□□ 0.34
SSX4O60224 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSX4O60224 AL023875.1-201ENST00000640777 796 ntBASIC17.17■□□□□ 0.34
SSX4O60224 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSX4O60224 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSX4O60224 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSX4O60224 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.17■□□□□ 0.34
SSX4O60224 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSX4O60224 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SSX4O60224 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSX4O60224 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSX4O60224 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSX4O60224 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSX4O60224 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.16■□□□□ 0.34
SSX4O60224 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.16■□□□□ 0.34
SSX4O60224 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SSX4O60224 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC17.16■□□□□ 0.34
SSX4O60224 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SSX4O60224 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SSX4O60224 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.16■□□□□ 0.34
SSX4O60224 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SSX4O60224 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SSX4O60224 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SSX4O60224 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SSX4O60224 WIZP1-201ENST00000531444 2299 ntBASIC17.16■□□□□ 0.34
SSX4O60224 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SSX4O60224 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SSX4O60224 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC17.16■□□□□ 0.34
SSX4O60224 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
SSX4O60224 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.16■□□□□ 0.34
SSX4O60224 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SSX4O60224 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.16■□□□□ 0.34
SSX4O60224 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.16■□□□□ 0.34
SSX4O60224 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
SSX4O60224 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
SSX4O60224 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.16■□□□□ 0.34
SSX4O60224 AC120498.8-201ENST00000614275 531 ntBASIC17.16■□□□□ 0.34
SSX4O60224 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SSX4O60224 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.16■□□□□ 0.34
SSX4O60224 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.16■□□□□ 0.34
SSX4O60224 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SSX4O60224 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.16■□□□□ 0.34
SSX4O60224 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC17.16■□□□□ 0.34
SSX4O60224 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
SSX4O60224 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.16■□□□□ 0.34
SSX4O60224 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SSX4O60224 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
SSX4O60224 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SSX4O60224 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.16■□□□□ 0.34
SSX4O60224 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
SSX4O60224 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
SSX4O60224 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC17.15■□□□□ 0.34
SSX4O60224 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
SSX4O60224 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 AC239809.2-201ENST00000415381 517 ntBASIC17.15■□□□□ 0.34
SSX4O60224 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
SSX4O60224 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.15■□□□□ 0.34
SSX4O60224 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.15■□□□□ 0.34
SSX4O60224 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC17.15■□□□□ 0.34
SSX4O60224 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 AC005829.2-201ENST00000571422 1056 ntBASIC17.15■□□□□ 0.34
SSX4O60224 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.15■□□□□ 0.34
SSX4O60224 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
SSX4O60224 MTDHP1-201ENST00000605323 784 ntBASIC17.15■□□□□ 0.34
SSX4O60224 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
SSX4O60224 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SSX4O60224 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
SSX4O60224 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms