Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SGCEO43556 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SGCEO43556 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SGCEO43556 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SGCEO43556 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SGCEO43556 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SGCEO43556 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SGCEO43556 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SGCEO43556 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC16.76■□□□□ 0.27
SGCEO43556 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SGCEO43556 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SGCEO43556 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC16.76■□□□□ 0.27
SGCEO43556 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC16.76■□□□□ 0.27
SGCEO43556 TK2-204ENST00000525974 1178 ntTSL 2 BASIC16.76■□□□□ 0.27
SGCEO43556 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SGCEO43556 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SGCEO43556 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC16.76■□□□□ 0.27
SGCEO43556 AC131212.4-201ENST00000623606 975 ntBASIC16.76■□□□□ 0.27
SGCEO43556 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SGCEO43556 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC16.76■□□□□ 0.27
SGCEO43556 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
SGCEO43556 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SGCEO43556 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SGCEO43556 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SGCEO43556 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SGCEO43556 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SGCEO43556 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SGCEO43556 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SGCEO43556 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC16.76■□□□□ 0.27
SGCEO43556 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
SGCEO43556 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC16.75■□□□□ 0.27
SGCEO43556 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SGCEO43556 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC16.75■□□□□ 0.27
SGCEO43556 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC16.75■□□□□ 0.27
SGCEO43556 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC16.75■□□□□ 0.27
SGCEO43556 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC16.75■□□□□ 0.27
SGCEO43556 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SGCEO43556 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SGCEO43556 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SGCEO43556 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SGCEO43556 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SGCEO43556 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SGCEO43556 TSPY21P-201ENST00000433481 731 ntBASIC16.75■□□□□ 0.27
SGCEO43556 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
SGCEO43556 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC16.75■□□□□ 0.27
SGCEO43556 AC142381.4-202ENST00000563973 229 ntBASIC16.75■□□□□ 0.27
SGCEO43556 RARRES2P10-201ENST00000564312 460 ntBASIC16.75■□□□□ 0.27
SGCEO43556 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC16.75■□□□□ 0.27
SGCEO43556 SPIB-206ENST00000596074 847 ntTSL 2 BASIC16.75■□□□□ 0.27
SGCEO43556 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC16.75■□□□□ 0.27
SGCEO43556 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SGCEO43556 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
SGCEO43556 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
SGCEO43556 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SGCEO43556 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SGCEO43556 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SGCEO43556 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SGCEO43556 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
SGCEO43556 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SGCEO43556 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SGCEO43556 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SGCEO43556 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
SGCEO43556 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC16.75■□□□□ 0.27
SGCEO43556 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC16.75■□□□□ 0.27
SGCEO43556 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SGCEO43556 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC16.74■□□□□ 0.27
SGCEO43556 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
SGCEO43556 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
SGCEO43556 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
SGCEO43556 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.74■□□□□ 0.27
SGCEO43556 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC16.74■□□□□ 0.27
SGCEO43556 KSR1P1-201ENST00000446298 240 ntBASIC16.74■□□□□ 0.27
SGCEO43556 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC16.74■□□□□ 0.27
SGCEO43556 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC16.74■□□□□ 0.27
SGCEO43556 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC16.74■□□□□ 0.27
SGCEO43556 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC16.74■□□□□ 0.27
SGCEO43556 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC16.74■□□□□ 0.27
SGCEO43556 FP475955.4-201ENST00000623131 1990 ntBASIC16.74■□□□□ 0.27
SGCEO43556 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
SGCEO43556 IRX1P1-201ENST00000438849 1838 ntBASIC16.74■□□□□ 0.27
SGCEO43556 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC16.74■□□□□ 0.27
SGCEO43556 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SGCEO43556 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.74■□□□□ 0.27
SGCEO43556 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms