Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SDCBPO00560 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SDCBPO00560 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SDCBPO00560 IRX1P1-201ENST00000438849 1838 ntBASIC16.14■□□□□ 0.17
SDCBPO00560 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.14■□□□□ 0.17
SDCBPO00560 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SDCBPO00560 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
SDCBPO00560 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.14■□□□□ 0.17
SDCBPO00560 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC16.14■□□□□ 0.17
SDCBPO00560 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
SDCBPO00560 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SDCBPO00560 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.14■□□□□ 0.17
SDCBPO00560 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SDCBPO00560 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
SDCBPO00560 AC093525.10-201ENST00000625130 1569 ntBASIC16.13■□□□□ 0.17
SDCBPO00560 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDCBPO00560 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDCBPO00560 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.13■□□□□ 0.17
SDCBPO00560 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDCBPO00560 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SDCBPO00560 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDCBPO00560 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SDCBPO00560 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SDCBPO00560 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SDCBPO00560 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.13■□□□□ 0.17
SDCBPO00560 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC16.13■□□□□ 0.17
SDCBPO00560 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.13■□□□□ 0.17
SDCBPO00560 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.13■□□□□ 0.17
SDCBPO00560 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDCBPO00560 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SDCBPO00560 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC16.13■□□□□ 0.17
SDCBPO00560 INO80E-214ENST00000620599 515 ntTSL 2 BASIC16.13■□□□□ 0.17
SDCBPO00560 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC16.13■□□□□ 0.17
SDCBPO00560 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDCBPO00560 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDCBPO00560 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDCBPO00560 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SDCBPO00560 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDCBPO00560 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.13■□□□□ 0.17
SDCBPO00560 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC16.13■□□□□ 0.17
SDCBPO00560 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDCBPO00560 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC16.13■□□□□ 0.17
SDCBPO00560 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
SDCBPO00560 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDCBPO00560 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.13■□□□□ 0.17
SDCBPO00560 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SDCBPO00560 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SDCBPO00560 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
SDCBPO00560 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC16.12■□□□□ 0.17
SDCBPO00560 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.12■□□□□ 0.17
SDCBPO00560 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SDCBPO00560 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SDCBPO00560 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SDCBPO00560 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SDCBPO00560 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC16.12■□□□□ 0.17
SDCBPO00560 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC16.12■□□□□ 0.17
SDCBPO00560 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC16.12■□□□□ 0.17
SDCBPO00560 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC16.12■□□□□ 0.17
SDCBPO00560 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.12■□□□□ 0.17
SDCBPO00560 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SDCBPO00560 PCDHB18P-201ENST00000524813 2368 ntBASIC16.12■□□□□ 0.17
SDCBPO00560 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC16.11■□□□□ 0.17
SDCBPO00560 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SDCBPO00560 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
SDCBPO00560 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SDCBPO00560 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SDCBPO00560 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SDCBPO00560 LTB4R2-202ENST00000528054 3092 ntBASIC16.11■□□□□ 0.17
SDCBPO00560 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SDCBPO00560 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SDCBPO00560 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SDCBPO00560 AP006587.1-201ENST00000534129 1502 ntBASIC16.11■□□□□ 0.17
SDCBPO00560 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SDCBPO00560 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SDCBPO00560 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SDCBPO00560 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SDCBPO00560 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SDCBPO00560 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC16.11■□□□□ 0.17
SDCBPO00560 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.11■□□□□ 0.17
SDCBPO00560 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC16.11■□□□□ 0.17
SDCBPO00560 PNN-205ENST00000556530 601 ntTSL 2 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms