Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LRRC53A6NM62 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LRRC53A6NM62 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LRRC53A6NM62 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
LRRC53A6NM62 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LRRC53A6NM62 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.47■□□□□ 0.87
LRRC53A6NM62 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.47■□□□□ 0.87
LRRC53A6NM62 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.47■□□□□ 0.87
LRRC53A6NM62 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.47■□□□□ 0.87
LRRC53A6NM62 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LRRC53A6NM62 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.47■□□□□ 0.87
LRRC53A6NM62 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC20.47■□□□□ 0.87
LRRC53A6NM62 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LRRC53A6NM62 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.47■□□□□ 0.87
LRRC53A6NM62 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.47■□□□□ 0.87
LRRC53A6NM62 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
LRRC53A6NM62 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LRRC53A6NM62 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LRRC53A6NM62 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.46■□□□□ 0.87
LRRC53A6NM62 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
LRRC53A6NM62 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC53A6NM62 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC53A6NM62 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC53A6NM62 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC53A6NM62 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC53A6NM62 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC20.46■□□□□ 0.87
LRRC53A6NM62 KRT17P3-201ENST00000420566 1262 ntBASIC20.46■□□□□ 0.87
LRRC53A6NM62 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC53A6NM62 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC53A6NM62 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC53A6NM62 AC026366.1-201ENST00000488803 879 ntBASIC20.46■□□□□ 0.87
LRRC53A6NM62 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.46■□□□□ 0.87
LRRC53A6NM62 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
LRRC53A6NM62 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.46■□□□□ 0.87
LRRC53A6NM62 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.46■□□□□ 0.87
LRRC53A6NM62 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC53A6NM62 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC53A6NM62 BICD1-207ENST00000551848 1962 ntBASIC20.46■□□□□ 0.87
LRRC53A6NM62 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.46■□□□□ 0.87
LRRC53A6NM62 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC53A6NM62 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC53A6NM62 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC53A6NM62 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC53A6NM62 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC53A6NM62 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LRRC53A6NM62 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
LRRC53A6NM62 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LRRC53A6NM62 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRC53A6NM62 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRC53A6NM62 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRC53A6NM62 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LRRC53A6NM62 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.45■□□□□ 0.86
LRRC53A6NM62 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRC53A6NM62 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.45■□□□□ 0.86
LRRC53A6NM62 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.45■□□□□ 0.86
LRRC53A6NM62 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.45■□□□□ 0.86
LRRC53A6NM62 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRC53A6NM62 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LRRC53A6NM62 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRC53A6NM62 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.45■□□□□ 0.86
LRRC53A6NM62 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LRRC53A6NM62 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC53A6NM62 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC53A6NM62 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
LRRC53A6NM62 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
LRRC53A6NM62 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC20.44■□□□□ 0.86
LRRC53A6NM62 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC53A6NM62 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
LRRC53A6NM62 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
LRRC53A6NM62 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC53A6NM62 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC53A6NM62 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
LRRC53A6NM62 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC53A6NM62 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.44■□□□□ 0.86
LRRC53A6NM62 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC53A6NM62 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
LRRC53A6NM62 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
LRRC53A6NM62 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC53A6NM62 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC53A6NM62 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC53A6NM62 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
LRRC53A6NM62 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.44■□□□□ 0.86
LRRC53A6NM62 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.44■□□□□ 0.86
LRRC53A6NM62 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
LRRC53A6NM62 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
LRRC53A6NM62 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.44■□□□□ 0.86
LRRC53A6NM62 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC53A6NM62 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.44■□□□□ 0.86
LRRC53A6NM62 AL023875.1-201ENST00000640777 796 ntBASIC20.44■□□□□ 0.86
LRRC53A6NM62 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC53A6NM62 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC53A6NM62 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.44■□□□□ 0.86
LRRC53A6NM62 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC53A6NM62 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC53A6NM62 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LRRC53A6NM62 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRC53A6NM62 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
LRRC53A6NM62 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LRRC53A6NM62 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC20.43■□□□□ 0.86
LRRC53A6NM62 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms