Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 AP006587.1-201ENST00000534129 1502 ntBASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
SMARCAL1Q9NZC9 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCAL1Q9NZC9 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
SMARCAL1Q9NZC9 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
SMARCAL1Q9NZC9 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20■□□□□ 0.79
SMARCAL1Q9NZC9 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20■□□□□ 0.79
SMARCAL1Q9NZC9 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMARCAL1Q9NZC9 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCAL1Q9NZC9 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMARCAL1Q9NZC9 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20■□□□□ 0.79
SMARCAL1Q9NZC9 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20■□□□□ 0.79
SMARCAL1Q9NZC9 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCAL1Q9NZC9 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCAL1Q9NZC9 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCAL1Q9NZC9 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCAL1Q9NZC9 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCAL1Q9NZC9 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20■□□□□ 0.79
SMARCAL1Q9NZC9 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCAL1Q9NZC9 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCAL1Q9NZC9 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCAL1Q9NZC9 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 AC083906.6-201ENST00000641366 219 ntBASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SMARCAL1Q9NZC9 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
SMARCAL1Q9NZC9 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCAL1Q9NZC9 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCAL1Q9NZC9 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCAL1Q9NZC9 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCAL1Q9NZC9 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.97■□□□□ 0.79
SMARCAL1Q9NZC9 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCAL1Q9NZC9 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
SMARCAL1Q9NZC9 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCAL1Q9NZC9 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCAL1Q9NZC9 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SMARCAL1Q9NZC9 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms