Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 RN7SL850P-201ENST00000579959 291 ntBASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 AP000692.2-201ENST00000608391 879 ntBASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CUEDC1Q9NWM3 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 AP000525.1-201ENST00000608286 694 ntBASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 AC079598.2-202ENST00000546624 1451 ntBASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CUEDC1Q9NWM3 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 SLC25A1P4-201ENST00000567977 778 ntBASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 DGCR10-201ENST00000609839 495 ntBASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 AC092865.7-201ENST00000641832 219 ntBASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CUEDC1Q9NWM3 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 AIRN-201ENST00000601203 4374 ntBASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 AL390955.1-201ENST00000428694 934 ntBASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 AC097488.1-201ENST00000507834 756 ntBASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CUEDC1Q9NWM3 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms