Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 PRSS44-201ENST00000515154 1146 ntBASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 AC008622.2-201ENST00000617006 1229 ntBASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 IER3-202ENST00000376377 1350 ntBASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 KRT18P56-201ENST00000507275 550 ntBASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.98■□□□□ 0.63
TM9SF3Q9HD45 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 AC087289.5-201ENST00000586076 3175 ntBASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 KRT18P38-201ENST00000449496 1282 ntBASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.97■□□□□ 0.63
TM9SF3Q9HD45 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms