Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 AC133552.2-202ENST00000575694 574 ntBASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 RAP2CP1-201ENST00000605103 478 ntBASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC28BQ9BUN5 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
CCDC28BQ9BUN5 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 AC124283.5-201ENST00000624661 1809 ntBASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 KRT18P16-201ENST00000510337 1294 ntBASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 AL162741.1-201ENST00000565563 1558 ntBASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.46■□□□□ 0.55
CCDC28BQ9BUN5 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 AL121906.2-201ENST00000621597 723 ntBASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCDC28BQ9BUN5 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms