Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 AC011270.2-201ENST00000624293 2550 ntBASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 AL049597.2-201ENST00000565575 961 ntBASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 AFG3L1P-217ENST00000557444 2447 ntBASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 AC096733.2-201ENST00000609937 1394 ntBASIC18.3■□□□□ 0.52
CLIP3Q96DZ5 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 CCR12P-201ENST00000446203 998 ntBASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 FZD10-202ENST00000539839 3282 ntBASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLIP3Q96DZ5 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 AC116562.4-202ENST00000641738 218 ntBASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLIP3Q96DZ5 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLIP3Q96DZ5 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CLIP3Q96DZ5 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
CLIP3Q96DZ5 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.27■□□□□ 0.52
CLIP3Q96DZ5 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CLIP3Q96DZ5 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLIP3Q96DZ5 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.27■□□□□ 0.52
CLIP3Q96DZ5 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CLIP3Q96DZ5 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CLIP3Q96DZ5 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.27■□□□□ 0.52
CLIP3Q96DZ5 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.27■□□□□ 0.52
CLIP3Q96DZ5 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.27■□□□□ 0.52
CLIP3Q96DZ5 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CLIP3Q96DZ5 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.27■□□□□ 0.52
CLIP3Q96DZ5 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms