Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.08■□□□□ 0.64
HDDC3Q8N4P3 AL441883.1-201ENST00000566170 1045 ntBASIC19.08■□□□□ 0.64
HDDC3Q8N4P3 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC19.08■□□□□ 0.64
HDDC3Q8N4P3 AC069148.1-201ENST00000608741 768 ntBASIC19.08■□□□□ 0.64
HDDC3Q8N4P3 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.08■□□□□ 0.64
HDDC3Q8N4P3 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.64
HDDC3Q8N4P3 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
HDDC3Q8N4P3 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
HDDC3Q8N4P3 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
HDDC3Q8N4P3 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 DAP-202ENST00000432074 1048 ntTSL 2 BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 CLN6-214ENST00000636314 442 ntTSL 3 BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HDDC3Q8N4P3 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 MIR4674-201ENST00000582457 87 ntBASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.06■□□□□ 0.64
HDDC3Q8N4P3 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HDDC3Q8N4P3 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.05■□□□□ 0.64
HDDC3Q8N4P3 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.05■□□□□ 0.64
HDDC3Q8N4P3 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.05■□□□□ 0.64
HDDC3Q8N4P3 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.05■□□□□ 0.64
HDDC3Q8N4P3 AP000523.1-201ENST00000398242 1049 ntBASIC19.05■□□□□ 0.64
HDDC3Q8N4P3 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HDDC3Q8N4P3 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.05■□□□□ 0.64
HDDC3Q8N4P3 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.05■□□□□ 0.64
HDDC3Q8N4P3 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.05■□□□□ 0.64
HDDC3Q8N4P3 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.05■□□□□ 0.64
HDDC3Q8N4P3 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.05■□□□□ 0.64
HDDC3Q8N4P3 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.05■□□□□ 0.64
HDDC3Q8N4P3 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.05■□□□□ 0.64
HDDC3Q8N4P3 TREX1-205ENST00000625293 1783 ntBASIC19.05■□□□□ 0.64
HDDC3Q8N4P3 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HDDC3Q8N4P3 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.05■□□□□ 0.64
HDDC3Q8N4P3 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
HDDC3Q8N4P3 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 AC005332.1-201ENST00000577698 1310 ntBASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 CLEC4GP1-201ENST00000596555 870 ntBASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 AC008622.2-201ENST00000617006 1229 ntBASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HDDC3Q8N4P3 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms