Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 AC046158.3-201ENST00000624947 2558 ntBASIC16.97■□□□□ 0.31
CCDC58Q4VC31 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 AL512353.2-201ENST00000448759 1962 ntBASIC16.97■□□□□ 0.31
CCDC58Q4VC31 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 GUK1-205ENST00000366722 850 ntTSL 3 BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 AL390719.1-204ENST00000412397 1219 ntBASIC16.97■□□□□ 0.31
CCDC58Q4VC31 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC58Q4VC31 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 AL391005.1-201ENST00000623953 2435 ntBASIC16.96■□□□□ 0.31
CCDC58Q4VC31 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 LSM12P1-201ENST00000411836 588 ntBASIC16.96■□□□□ 0.31
CCDC58Q4VC31 AC006015.1-201ENST00000429970 570 ntBASIC16.96■□□□□ 0.31
CCDC58Q4VC31 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 AC141586.5-201ENST00000624546 2050 ntBASIC16.96■□□□□ 0.31
CCDC58Q4VC31 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
CCDC58Q4VC31 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC16.96■□□□□ 0.3
CCDC58Q4VC31 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC16.96■□□□□ 0.3
CCDC58Q4VC31 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CCDC58Q4VC31 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CCDC58Q4VC31 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC58Q4VC31 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.95■□□□□ 0.3
CCDC58Q4VC31 BICD1-207ENST00000551848 1962 ntBASIC16.95■□□□□ 0.3
CCDC58Q4VC31 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC58Q4VC31 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC58Q4VC31 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC58Q4VC31 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
CCDC58Q4VC31 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.95■□□□□ 0.3
CCDC58Q4VC31 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC16.95■□□□□ 0.3
CCDC58Q4VC31 GXYLT1P2-201ENST00000433312 1230 ntBASIC16.95■□□□□ 0.3
CCDC58Q4VC31 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC16.95■□□□□ 0.3
CCDC58Q4VC31 MDK-213ENST00000617138 635 ntTSL 2 BASIC16.95■□□□□ 0.3
CCDC58Q4VC31 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC58Q4VC31 SDHAP1-207ENST00000440850 2000 ntBASIC16.95■□□□□ 0.3
CCDC58Q4VC31 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.95■□□□□ 0.3
CCDC58Q4VC31 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
CCDC58Q4VC31 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC58Q4VC31 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC58Q4VC31 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC58Q4VC31 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC58Q4VC31 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CCDC58Q4VC31 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 NOC2LP2-201ENST00000407594 1944 ntBASIC16.94■□□□□ 0.3
CCDC58Q4VC31 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC58Q4VC31 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms