Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 Z85996.1-201ENST00000494644 937 ntBASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTCHD3Q3KNS1 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
PTCHD3Q3KNS1 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.57
PTCHD3Q3KNS1 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PTCHD3Q3KNS1 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PTCHD3Q3KNS1 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
PTCHD3Q3KNS1 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.58■□□□□ 0.57
PTCHD3Q3KNS1 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.58■□□□□ 0.56
PTCHD3Q3KNS1 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.58■□□□□ 0.56
PTCHD3Q3KNS1 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTCHD3Q3KNS1 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PTCHD3Q3KNS1 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTCHD3Q3KNS1 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.58■□□□□ 0.56
PTCHD3Q3KNS1 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTCHD3Q3KNS1 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.58■□□□□ 0.56
PTCHD3Q3KNS1 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.58■□□□□ 0.56
PTCHD3Q3KNS1 REXO1L10P-201ENST00000615707 1290 ntBASIC18.58■□□□□ 0.56
PTCHD3Q3KNS1 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PTCHD3Q3KNS1 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTCHD3Q3KNS1 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.58■□□□□ 0.56
PTCHD3Q3KNS1 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
PTCHD3Q3KNS1 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTCHD3Q3KNS1 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTCHD3Q3KNS1 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.58■□□□□ 0.56
PTCHD3Q3KNS1 KRT16P1-201ENST00000399124 1418 ntBASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 FEM1AP3-201ENST00000403722 1741 ntBASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 AC004980.1-204ENST00000429707 299 ntBASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 TSPY21P-201ENST00000433481 731 ntBASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 TSPY23P-201ENST00000440136 739 ntBASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 AC131212.4-201ENST00000623606 975 ntBASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 AC004408.2-201ENST00000623613 2777 ntBASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.57■□□□□ 0.56
PTCHD3Q3KNS1 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.56■□□□□ 0.56
PTCHD3Q3KNS1 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PTCHD3Q3KNS1 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTCHD3Q3KNS1 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PTCHD3Q3KNS1 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.56■□□□□ 0.56
PTCHD3Q3KNS1 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.56■□□□□ 0.56
PTCHD3Q3KNS1 RBM17P1-201ENST00000453646 1190 ntBASIC18.56■□□□□ 0.56
PTCHD3Q3KNS1 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.56■□□□□ 0.56
PTCHD3Q3KNS1 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
PTCHD3Q3KNS1 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTCHD3Q3KNS1 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
PTCHD3Q3KNS1 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTCHD3Q3KNS1 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
PTCHD3Q3KNS1 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTCHD3Q3KNS1 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTCHD3Q3KNS1 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTCHD3Q3KNS1 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.56■□□□□ 0.56
PTCHD3Q3KNS1 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTCHD3Q3KNS1 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 251.3 ms