Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
RFX4Q33E94 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX4Q33E94 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
RFX4Q33E94 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX4Q33E94 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX4Q33E94 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC17.68■□□□□ 0.42
RFX4Q33E94 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.68■□□□□ 0.42
RFX4Q33E94 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.68■□□□□ 0.42
RFX4Q33E94 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFX4Q33E94 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
RFX4Q33E94 AL162741.1-201ENST00000565563 1558 ntBASIC17.68■□□□□ 0.42
RFX4Q33E94 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC17.68■□□□□ 0.42
RFX4Q33E94 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFX4Q33E94 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.68■□□□□ 0.42
RFX4Q33E94 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
RFX4Q33E94 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFX4Q33E94 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
RFX4Q33E94 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFX4Q33E94 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.68■□□□□ 0.42
RFX4Q33E94 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC17.68■□□□□ 0.42
RFX4Q33E94 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX4Q33E94 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX4Q33E94 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFX4Q33E94 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX4Q33E94 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX4Q33E94 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX4Q33E94 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX4Q33E94 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX4Q33E94 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX4Q33E94 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
RFX4Q33E94 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RFX4Q33E94 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX4Q33E94 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX4Q33E94 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
RFX4Q33E94 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX4Q33E94 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX4Q33E94 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.67■□□□□ 0.42
RFX4Q33E94 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
RFX4Q33E94 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX4Q33E94 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX4Q33E94 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX4Q33E94 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX4Q33E94 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.67■□□□□ 0.42
RFX4Q33E94 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX4Q33E94 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX4Q33E94 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX4Q33E94 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX4Q33E94 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX4Q33E94 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX4Q33E94 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.67■□□□□ 0.42
RFX4Q33E94 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX4Q33E94 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX4Q33E94 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC17.66■□□□□ 0.42
RFX4Q33E94 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.66■□□□□ 0.42
RFX4Q33E94 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.66■□□□□ 0.42
RFX4Q33E94 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.66■□□□□ 0.42
RFX4Q33E94 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.66■□□□□ 0.42
RFX4Q33E94 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC17.66■□□□□ 0.42
RFX4Q33E94 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.66■□□□□ 0.42
RFX4Q33E94 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC17.66■□□□□ 0.42
RFX4Q33E94 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.66■□□□□ 0.42
RFX4Q33E94 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.66■□□□□ 0.42
RFX4Q33E94 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 AC083906.6-201ENST00000641366 219 ntBASIC17.66■□□□□ 0.42
RFX4Q33E94 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
RFX4Q33E94 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
RFX4Q33E94 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.66■□□□□ 0.42
RFX4Q33E94 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
RFX4Q33E94 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
RFX4Q33E94 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
RFX4Q33E94 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX4Q33E94 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFX4Q33E94 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.65■□□□□ 0.42
RFX4Q33E94 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
RFX4Q33E94 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.65■□□□□ 0.42
RFX4Q33E94 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFX4Q33E94 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.65■□□□□ 0.42
RFX4Q33E94 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.65■□□□□ 0.42
RFX4Q33E94 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFX4Q33E94 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RFX4Q33E94 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFX4Q33E94 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms