Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC21.18■□□□□ 0.982e-10■□□□□ 9.1
U2AF1Q01081 AKAP9-216ENST00000619023 6006 ntTSL 5 BASIC14.53□□□□□ -0.082e-10■□□□□ 9.1
U2AF1Q01081 AKAP9-214ENST00000493453 6020 ntTSL 211.62□□□□□ -0.552e-10■□□□□ 9.1
U2AF1Q01081 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC6.55□□□□□ -1.362e-10■□□□□ 9.1
U2AF1Q01081 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.36□□□□□ -1.872e-10■□□□□ 9.1
U2AF1Q01081 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.972e-10■□□□□ 9.1
U2AF1Q01081 ELF2-209ENST00000511184 1766 ntTSL 537.08■■■■□ 3.535e-8■□□□□ 9.1
U2AF1Q01081 ELF2-208ENST00000511006 1434 ntTSL 1 (best)29.84■■■□□ 2.375e-8■□□□□ 9.1
U2AF1Q01081 PSMD2-218ENST00000491494 371 ntTSL 222.81■■□□□ 1.245e-8■□□□□ 9.1
U2AF1Q01081 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.885e-8■□□□□ 9.1
U2AF1Q01081 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC20.01■□□□□ 0.795e-8■□□□□ 9.1
U2AF1Q01081 SRPRA-201ENST00000332118 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.445e-8■□□□□ 9.1
U2AF1Q01081 TSPYL1-201ENST00000368608 3326 ntAPPRIS P1 BASIC15.36■□□□□ 0.054e-15■□□□□ 9.1
U2AF1Q01081 KMT2C-205ENST00000418673 682 ntTSL 514.38□□□□□ -0.115e-8■□□□□ 9.1
U2AF1Q01081 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.54□□□□□ -1.525e-8■□□□□ 9.1
U2AF1Q01081 ZNF207-202ENST00000342555 1905 ntTSL 5 BASIC10.66□□□□□ -0.73e-12■□□□□ 9
U2AF1Q01081 ZNF207-209ENST00000579416 396 ntTSL 25.79□□□□□ -1.483e-12■□□□□ 9
U2AF1Q01081 ZNF207-205ENST00000394679 847 ntTSL 34.49□□□□□ -1.693e-12■□□□□ 9
U2AF1Q01081 ZNF207-215ENST00000582705 333 ntTSL 23.88□□□□□ -1.793e-12■□□□□ 9
U2AF1Q01081 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC5.6□□□□□ -1.513e-8■□□□□ 9
U2AF1Q01081 NEAT1-204ENST00000612303 572 ntTSL 3 BASIC17.69■□□□□ 0.421e-323■□□□□ 9
U2AF1Q01081 SDR39U1-207ENST00000553937 217 ntTSL 312.12□□□□□ -0.475e-8■□□□□ 9
U2AF1Q01081 FAM192A-209ENST00000565458 1029 ntTSL 528.15■■■□□ 2.15e-13■□□□□ 9
U2AF1Q01081 FAM192A-216ENST00000566681 621 ntTSL 428.15■■■□□ 2.15e-13■□□□□ 9
U2AF1Q01081 FAM192A-210ENST00000565760 658 ntTSL 324.78■■□□□ 1.565e-13■□□□□ 9
U2AF1Q01081 FAM192A-215ENST00000566584 676 ntTSL 523.45■■□□□ 1.345e-13■□□□□ 9
U2AF1Q01081 FAM192A-214ENST00000566481 538 ntTSL 422.24■■□□□ 1.155e-13■□□□□ 9
U2AF1Q01081 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.995e-13■□□□□ 9
U2AF1Q01081 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC19.74■□□□□ 0.755e-13■□□□□ 9
U2AF1Q01081 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.225e-13■□□□□ 9
U2AF1Q01081 FAM192A-203ENST00000562324 597 ntTSL 212.11□□□□□ -0.475e-13■□□□□ 9
U2AF1Q01081 FAM192A-206ENST00000564108 1055 ntAPPRIS P1 TSL 3 BASIC10.89□□□□□ -0.675e-13■□□□□ 9
U2AF1Q01081 FAM192A-208ENST00000565353 477 ntTSL 47.41□□□□□ -1.225e-13■□□□□ 9
U2AF1Q01081 FAM192A-221ENST00000570184 593 ntTSL 33.73□□□□□ -1.815e-13■□□□□ 9
U2AF1Q01081 CABIN1-206ENST00000454754 1321 ntTSL 1 (best)26.83■■□□□ 1.894e-10■□□□□ 9
U2AF1Q01081 CABIN1-205ENST00000445422 1472 ntTSL 225.83■■□□□ 1.734e-10■□□□□ 9
U2AF1Q01081 CABIN1-203ENST00000398319 7480 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.064e-10■□□□□ 9
U2AF1Q01081 CABIN1-201ENST00000263119 7222 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.094e-10■□□□□ 9
U2AF1Q01081 CABIN1-204ENST00000405822 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.134e-10■□□□□ 9
U2AF1Q01081 CABIN1-214ENST00000617531 7072 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.214e-10■□□□□ 9
U2AF1Q01081 FREM1-203ENST00000380894 2481 ntTSL 1 (best) BASIC11.83□□□□□ -0.527e-7■□□□□ 9
U2AF1Q01081 FREM1-205ENST00000427623 1421 ntTSL 511.15□□□□□ -0.627e-7■□□□□ 9
U2AF1Q01081 MLLT10-206ENST00000420525 538 ntTSL 33.84□□□□□ -1.797e-7■□□□□ 9
U2AF1Q01081 ICAM5-203ENST00000586480 2599 ntTSL 1 (best)27.03■■□□□ 1.922e-8■□□□□ 9
U2AF1Q01081 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.852e-8■□□□□ 9
U2AF1Q01081 CKAP5-211ENST00000532321 586 ntTSL 46.98□□□□□ -1.291e-17■□□□□ 9
U2AF1Q01081 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.321e-17■□□□□ 9
U2AF1Q01081 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC6.43□□□□□ -1.381e-17■□□□□ 9
U2AF1Q01081 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.86□□□□□ -1.631e-17■□□□□ 9
U2AF1Q01081 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.243e-9■□□□□ 9
U2AF1Q01081 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC24.35■■□□□ 1.493e-9■□□□□ 9
U2AF1Q01081 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC23.59■■□□□ 1.373e-9■□□□□ 9
U2AF1Q01081 NPEPL1-207ENST00000529976 4684 ntTSL 1 (best)20.62■□□□□ 0.893e-9■□□□□ 9
U2AF1Q01081 NPEPL1-206ENST00000527587 4633 ntTSL 519.62■□□□□ 0.733e-9■□□□□ 9
U2AF1Q01081 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.023e-9■□□□□ 9
U2AF1Q01081 PSME2-212ENST00000560370 620 ntTSL 321.59■■□□□ 1.051e-6■□□□□ 9
U2AF1Q01081 PSME2-202ENST00000471700 706 ntTSL 318.71■□□□□ 0.591e-6■□□□□ 9
U2AF1Q01081 PSME2-213ENST00000560410 755 ntTSL 3 BASIC16.02■□□□□ 0.161e-6■□□□□ 9
U2AF1Q01081 PSME2-217ENST00000615264 874 ntTSL 5 BASIC15.99■□□□□ 0.151e-6■□□□□ 9
U2AF1Q01081 PSME2-214ENST00000560592 760 ntTSL 215.99■□□□□ 0.151e-6■□□□□ 9
U2AF1Q01081 PSME2-215ENST00000560788 785 ntTSL 215.99■□□□□ 0.151e-6■□□□□ 9
U2AF1Q01081 PSME2-209ENST00000559453 1721 ntTSL 512.94□□□□□ -0.341e-6■□□□□ 9
U2AF1Q01081 PSME2-207ENST00000559056 512 ntTSL 510.83□□□□□ -0.681e-6■□□□□ 9
U2AF1Q01081 PSME2-210ENST00000559493 702 ntTSL 27.29□□□□□ -1.241e-6■□□□□ 9
U2AF1Q01081 AP1G2-218ENST00000555510 584 ntTSL 517.62■□□□□ 0.414e-8■□□□□ 9
U2AF1Q01081 AP1G2-216ENST00000554982 716 ntTSL 416.95■□□□□ 0.34e-8■□□□□ 9
U2AF1Q01081 AP1G2-217ENST00000555118 362 ntTSL 516.06■□□□□ 0.164e-8■□□□□ 9
U2AF1Q01081 AP1G2-228ENST00000556966 1098 ntTSL 315.36■□□□□ 0.054e-8■□□□□ 9
U2AF1Q01081 AP1G2-212ENST00000554554 2955 ntTSL 212.97□□□□□ -0.334e-8■□□□□ 9
U2AF1Q01081 DDX39B-219ENST00000481456 5158 ntTSL 214.51□□□□□ -0.092e-14■□□□□ 9
U2AF1Q01081 DDX39B-207ENST00000427214 1005 ntTSL 58.93□□□□□ -0.982e-14■□□□□ 9
U2AF1Q01081 SLC38A2-204ENST00000548111 583 ntTSL 47□□□□□ -1.296e-8■□□□□ 9
U2AF1Q01081 SLC38A2-202ENST00000546520 601 ntTSL 26.11□□□□□ -1.436e-8■□□□□ 9
U2AF1Q01081 SLC38A2-205ENST00000548236 865 ntTSL 25.54□□□□□ -1.526e-8■□□□□ 9
U2AF1Q01081 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC5.26□□□□□ -1.576e-8■□□□□ 9
U2AF1Q01081 PKM-203ENST00000389093 2279 ntTSL 5 BASIC32.48■■■□□ 2.792e-6■□□□□ 9
U2AF1Q01081 PKM-204ENST00000449901 2526 ntTSL 2 BASIC29.69■■■□□ 2.342e-6■□□□□ 9
U2AF1Q01081 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC29.24■■■□□ 2.272e-6■□□□□ 9
U2AF1Q01081 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC28.11■■■□□ 2.092e-6■□□□□ 9
U2AF1Q01081 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC26.82■■□□□ 1.882e-6■□□□□ 9
U2AF1Q01081 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC25.73■■□□□ 1.712e-6■□□□□ 9
U2AF1Q01081 LUC7L2-203ENST00000435096 570 ntTSL 324.17■■□□□ 1.464e-8■□□□□ 9
U2AF1Q01081 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC23.35■■□□□ 1.332e-8■□□□□ 9
U2AF1Q01081 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC22.59■■□□□ 1.212e-6■□□□□ 9
U2AF1Q01081 RAB11FIP3-204ENST00000449879 580 ntTSL 322.19■■□□□ 1.142e-6■□□□□ 9
U2AF1Q01081 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC22.14■■□□□ 1.142e-6■□□□□ 9
U2AF1Q01081 ACOX1-207ENST00000588176 574 ntTSL 421.57■■□□□ 1.042e-6■□□□□ 9
U2AF1Q01081 RAB11FIP3-206ENST00000452814 804 ntTSL 520.93■□□□□ 0.942e-6■□□□□ 9
U2AF1Q01081 RTKN-211ENST00000640304 612 ntTSL 520.09■□□□□ 0.812e-6■□□□□ 9
U2AF1Q01081 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.782e-6■□□□□ 9
U2AF1Q01081 ACOX1-209ENST00000589301 550 ntTSL 419.23■□□□□ 0.672e-6■□□□□ 9
U2AF1Q01081 SOD2-202ENST00000367054 815 ntTSL 2 BASIC18.79■□□□□ 0.62e-8■□□□□ 9
U2AF1Q01081 SAT1-201ENST00000379251 801 ntTSL 2 BASIC18.79■□□□□ 0.62e-8■□□□□ 9
U2AF1Q01081 RAB11FIP3-202ENST00000412256 558 ntTSL 218.64■□□□□ 0.572e-6■□□□□ 9
U2AF1Q01081 ACOX1-203ENST00000572047 2441 ntTSL 218.34■□□□□ 0.532e-6■□□□□ 9
U2AF1Q01081 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.492e-6■□□□□ 9
U2AF1Q01081 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC17.19■□□□□ 0.342e-6■□□□□ 9
U2AF1Q01081 PKM-224ENST00000569857 1355 ntTSL 516.61■□□□□ 0.252e-6■□□□□ 9
U2AF1Q01081 RTKN-210ENST00000492013 853 ntTSL 216.6■□□□□ 0.252e-6■□□□□ 9
U2AF1Q01081 PKM-222ENST00000568883 1863 ntTSL 5 BASIC16.31■□□□□ 0.22e-6■□□□□ 9
Retrieved 100 of 10,096 protein–RNA pairs in 41.8 ms