Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.86■□□□□ 0.77
HDAC4P56524 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.86■□□□□ 0.77
HDAC4P56524 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.86■□□□□ 0.77
HDAC4P56524 MIR718-201ENST00000390190 70 ntBASIC19.86■□□□□ 0.77
HDAC4P56524 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.86■□□□□ 0.77
HDAC4P56524 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC4P56524 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC4P56524 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC4P56524 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC4P56524 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
HDAC4P56524 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC4P56524 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC4P56524 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC4P56524 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC4P56524 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.85■□□□□ 0.77
HDAC4P56524 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC4P56524 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC4P56524 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
HDAC4P56524 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC4P56524 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC4P56524 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC4P56524 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.85■□□□□ 0.77
HDAC4P56524 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC4P56524 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.85■□□□□ 0.77
HDAC4P56524 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC4P56524 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.85■□□□□ 0.77
HDAC4P56524 TSPY7P-201ENST00000431358 1114 ntBASIC19.85■□□□□ 0.77
HDAC4P56524 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC4P56524 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.85■□□□□ 0.77
HDAC4P56524 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC4P56524 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.85■□□□□ 0.77
HDAC4P56524 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.85■□□□□ 0.77
HDAC4P56524 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.85■□□□□ 0.77
HDAC4P56524 REXO1L10P-201ENST00000615707 1290 ntBASIC19.85■□□□□ 0.77
HDAC4P56524 REXO1L12P-201ENST00000622156 912 ntBASIC19.85■□□□□ 0.77
HDAC4P56524 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
HDAC4P56524 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HDAC4P56524 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
HDAC4P56524 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.84■□□□□ 0.77
HDAC4P56524 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HDAC4P56524 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HDAC4P56524 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HDAC4P56524 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HDAC4P56524 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.84■□□□□ 0.77
HDAC4P56524 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.84■□□□□ 0.77
HDAC4P56524 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.84■□□□□ 0.77
HDAC4P56524 PRSS44-201ENST00000515154 1146 ntBASIC19.84■□□□□ 0.77
HDAC4P56524 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.84■□□□□ 0.77
HDAC4P56524 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.84■□□□□ 0.77
HDAC4P56524 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.84■□□□□ 0.77
HDAC4P56524 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.84■□□□□ 0.77
HDAC4P56524 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.84■□□□□ 0.77
HDAC4P56524 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.84■□□□□ 0.77
HDAC4P56524 AC026471.5-201ENST00000615068 467 ntBASIC19.84■□□□□ 0.77
HDAC4P56524 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HDAC4P56524 TNXA-203ENST00000507684 2038 ntBASIC19.84■□□□□ 0.77
HDAC4P56524 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.84■□□□□ 0.77
HDAC4P56524 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
HDAC4P56524 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HDAC4P56524 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HDAC4P56524 AC006333.2-201ENST00000607957 2099 ntBASIC19.83■□□□□ 0.77
HDAC4P56524 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HDAC4P56524 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.83■□□□□ 0.77
HDAC4P56524 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.83■□□□□ 0.77
HDAC4P56524 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.83■□□□□ 0.77
HDAC4P56524 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HDAC4P56524 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.83■□□□□ 0.77
HDAC4P56524 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HDAC4P56524 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HDAC4P56524 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HDAC4P56524 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HDAC4P56524 FAM207BP-201ENST00000447172 505 ntBASIC19.83■□□□□ 0.77
HDAC4P56524 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
HDAC4P56524 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.83■□□□□ 0.77
HDAC4P56524 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
HDAC4P56524 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HDAC4P56524 AP000692.2-201ENST00000608391 879 ntBASIC19.83■□□□□ 0.77
HDAC4P56524 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HDAC4P56524 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.83■□□□□ 0.76
HDAC4P56524 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
HDAC4P56524 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HDAC4P56524 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.83■□□□□ 0.76
HDAC4P56524 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.76
HDAC4P56524 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HDAC4P56524 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
HDAC4P56524 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC4P56524 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC4P56524 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
HDAC4P56524 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC4P56524 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC4P56524 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.82■□□□□ 0.76
HDAC4P56524 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC4P56524 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.82■□□□□ 0.76
HDAC4P56524 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC4P56524 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.82■□□□□ 0.76
HDAC4P56524 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC4P56524 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC4P56524 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
HDAC4P56524 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
HDAC4P56524 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms