Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA3P55318 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA3P55318 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC14.27□□□□□ -0.12
FOXA3P55318 FER1L4-210ENST00000615531 5998 ntBASIC14.27□□□□□ -0.12
FOXA3P55318 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA3P55318 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA3P55318 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA3P55318 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC14.27□□□□□ -0.13
FOXA3P55318 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA3P55318 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC14.27□□□□□ -0.13
FOXA3P55318 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC14.27□□□□□ -0.13
FOXA3P55318 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC14.27□□□□□ -0.13
FOXA3P55318 AC023632.3-201ENST00000521633 145 ntBASIC14.27□□□□□ -0.13
FOXA3P55318 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC14.27□□□□□ -0.13
FOXA3P55318 AL162412.1-201ENST00000567129 965 ntBASIC14.27□□□□□ -0.13
FOXA3P55318 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
FOXA3P55318 AL591742.1-201ENST00000604433 565 ntBASIC14.27□□□□□ -0.13
FOXA3P55318 AL136967.2-201ENST00000623968 743 ntBASIC14.27□□□□□ -0.13
FOXA3P55318 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC14.27□□□□□ -0.13
FOXA3P55318 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA3P55318 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
FOXA3P55318 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA3P55318 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA3P55318 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA3P55318 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA3P55318 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC14.27□□□□□ -0.13
FOXA3P55318 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA3P55318 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC14.27□□□□□ -0.13
FOXA3P55318 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA3P55318 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA3P55318 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.13
FOXA3P55318 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
FOXA3P55318 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC14.26□□□□□ -0.13
FOXA3P55318 AL162741.1-201ENST00000565563 1558 ntBASIC14.26□□□□□ -0.13
FOXA3P55318 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
FOXA3P55318 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC14.26□□□□□ -0.13
FOXA3P55318 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
FOXA3P55318 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC14.26□□□□□ -0.13
FOXA3P55318 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
FOXA3P55318 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
FOXA3P55318 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC14.26□□□□□ -0.13
FOXA3P55318 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
FOXA3P55318 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
FOXA3P55318 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
FOXA3P55318 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA3P55318 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
FOXA3P55318 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA3P55318 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA3P55318 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA3P55318 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA3P55318 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA3P55318 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC14.25□□□□□ -0.13
FOXA3P55318 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA3P55318 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
FOXA3P55318 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA3P55318 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
FOXA3P55318 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA3P55318 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA3P55318 NME4-202ENST00000382940 766 ntTSL 3 BASIC14.25□□□□□ -0.13
FOXA3P55318 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA3P55318 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA3P55318 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC14.25□□□□□ -0.13
FOXA3P55318 AC100791.3-201ENST00000617619 330 ntBASIC14.25□□□□□ -0.13
FOXA3P55318 NME4-211ENST00000620944 1193 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA3P55318 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
FOXA3P55318 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA3P55318 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC14.25□□□□□ -0.13
FOXA3P55318 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA3P55318 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC14.25□□□□□ -0.13
FOXA3P55318 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA3P55318 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC14.25□□□□□ -0.13
FOXA3P55318 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA3P55318 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA3P55318 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms