Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TSPY23P-201ENST00000440136 739 ntBASIC18.91■□□□□ 0.62
MSH3P20585 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
MSH3P20585 AC097488.1-201ENST00000507834 756 ntBASIC18.91■□□□□ 0.62
MSH3P20585 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.91■□□□□ 0.62
MSH3P20585 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.91■□□□□ 0.62
MSH3P20585 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.91■□□□□ 0.62
MSH3P20585 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.91■□□□□ 0.62
MSH3P20585 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.91■□□□□ 0.62
MSH3P20585 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.91■□□□□ 0.62
MSH3P20585 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.91■□□□□ 0.62
MSH3P20585 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.91■□□□□ 0.62
MSH3P20585 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSH3P20585 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
MSH3P20585 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
MSH3P20585 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSH3P20585 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.91■□□□□ 0.62
MSH3P20585 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSH3P20585 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSH3P20585 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
MSH3P20585 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.91■□□□□ 0.62
MSH3P20585 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSH3P20585 KRT8P11-201ENST00000409686 1436 ntBASIC18.91■□□□□ 0.62
MSH3P20585 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MSH3P20585 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
MSH3P20585 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
MSH3P20585 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
MSH3P20585 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSH3P20585 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSH3P20585 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSH3P20585 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSH3P20585 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSH3P20585 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MSH3P20585 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
MSH3P20585 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.9■□□□□ 0.62
MSH3P20585 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MSH3P20585 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSH3P20585 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
MSH3P20585 PRSS44-201ENST00000515154 1146 ntBASIC18.9■□□□□ 0.62
MSH3P20585 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.9■□□□□ 0.62
MSH3P20585 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
MSH3P20585 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.9■□□□□ 0.62
MSH3P20585 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSH3P20585 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.9■□□□□ 0.62
MSH3P20585 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
MSH3P20585 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSH3P20585 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.9■□□□□ 0.62
MSH3P20585 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MSH3P20585 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
MSH3P20585 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSH3P20585 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MSH3P20585 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSH3P20585 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.9■□□□□ 0.62
MSH3P20585 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSH3P20585 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
MSH3P20585 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MSH3P20585 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
MSH3P20585 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH3P20585 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
MSH3P20585 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH3P20585 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.89■□□□□ 0.61
MSH3P20585 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
MSH3P20585 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MSH3P20585 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
MSH3P20585 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MSH3P20585 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.89■□□□□ 0.61
MSH3P20585 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.89■□□□□ 0.61
MSH3P20585 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH3P20585 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MSH3P20585 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH3P20585 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH3P20585 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
MSH3P20585 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH3P20585 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MSH3P20585 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MSH3P20585 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH3P20585 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH3P20585 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
MSH3P20585 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.88■□□□□ 0.61
MSH3P20585 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.88■□□□□ 0.61
MSH3P20585 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
MSH3P20585 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.88■□□□□ 0.61
MSH3P20585 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 CRYGFP-201ENST00000418459 633 ntBASIC18.88■□□□□ 0.61
MSH3P20585 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.88■□□□□ 0.61
MSH3P20585 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MSH3P20585 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.88■□□□□ 0.61
MSH3P20585 AP000525.1-201ENST00000608286 694 ntBASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms