Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SEMA3DO95025 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SEMA3DO95025 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SEMA3DO95025 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SEMA3DO95025 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SEMA3DO95025 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
SEMA3DO95025 RPS2P4-201ENST00000476944 856 ntBASIC18.21■□□□□ 0.51
SEMA3DO95025 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.21■□□□□ 0.51
SEMA3DO95025 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.21■□□□□ 0.51
SEMA3DO95025 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SEMA3DO95025 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SEMA3DO95025 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SEMA3DO95025 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SEMA3DO95025 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.21■□□□□ 0.51
SEMA3DO95025 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
SEMA3DO95025 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SEMA3DO95025 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SEMA3DO95025 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.21■□□□□ 0.51
SEMA3DO95025 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
SEMA3DO95025 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
SEMA3DO95025 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SEMA3DO95025 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SEMA3DO95025 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.2■□□□□ 0.5
SEMA3DO95025 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.2■□□□□ 0.5
SEMA3DO95025 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SEMA3DO95025 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SEMA3DO95025 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SEMA3DO95025 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SEMA3DO95025 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SEMA3DO95025 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.2■□□□□ 0.5
SEMA3DO95025 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SEMA3DO95025 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SEMA3DO95025 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.2■□□□□ 0.5
SEMA3DO95025 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.2■□□□□ 0.5
SEMA3DO95025 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SEMA3DO95025 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SEMA3DO95025 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SEMA3DO95025 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.19■□□□□ 0.5
SEMA3DO95025 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.19■□□□□ 0.5
SEMA3DO95025 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEMA3DO95025 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEMA3DO95025 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEMA3DO95025 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEMA3DO95025 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEMA3DO95025 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEMA3DO95025 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEMA3DO95025 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.19■□□□□ 0.5
SEMA3DO95025 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SEMA3DO95025 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SEMA3DO95025 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.19■□□□□ 0.5
SEMA3DO95025 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.19■□□□□ 0.5
SEMA3DO95025 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SEMA3DO95025 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.19■□□□□ 0.5
SEMA3DO95025 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.19■□□□□ 0.5
SEMA3DO95025 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.19■□□□□ 0.5
SEMA3DO95025 AC004408.2-201ENST00000623613 2777 ntBASIC18.19■□□□□ 0.5
SEMA3DO95025 AL031985.4-201ENST00000642138 673 ntBASIC18.19■□□□□ 0.5
SEMA3DO95025 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEMA3DO95025 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEMA3DO95025 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEMA3DO95025 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEMA3DO95025 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.19■□□□□ 0.5
SEMA3DO95025 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
SEMA3DO95025 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEMA3DO95025 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SEMA3DO95025 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SEMA3DO95025 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SEMA3DO95025 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SEMA3DO95025 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.18■□□□□ 0.5
SEMA3DO95025 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.18■□□□□ 0.5
SEMA3DO95025 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.18■□□□□ 0.5
SEMA3DO95025 AIRN-201ENST00000601203 4374 ntBASIC18.18■□□□□ 0.5
SEMA3DO95025 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SEMA3DO95025 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SEMA3DO95025 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SEMA3DO95025 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SEMA3DO95025 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SEMA3DO95025 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SEMA3DO95025 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SEMA3DO95025 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SEMA3DO95025 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SEMA3DO95025 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.18■□□□□ 0.5
SEMA3DO95025 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.18■□□□□ 0.5
SEMA3DO95025 GCSHP5-201ENST00000443090 522 ntBASIC18.18■□□□□ 0.5
SEMA3DO95025 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SEMA3DO95025 AC098590.1-201ENST00000468126 897 ntBASIC18.18■□□□□ 0.5
SEMA3DO95025 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SEMA3DO95025 PRSS44-201ENST00000515154 1146 ntBASIC18.18■□□□□ 0.5
SEMA3DO95025 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.18■□□□□ 0.5
SEMA3DO95025 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SEMA3DO95025 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.18■□□□□ 0.5
SEMA3DO95025 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.18■□□□□ 0.5
SEMA3DO95025 AC142381.4-202ENST00000563973 229 ntBASIC18.18■□□□□ 0.5
SEMA3DO95025 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.18■□□□□ 0.5
SEMA3DO95025 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.18■□□□□ 0.5
SEMA3DO95025 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SEMA3DO95025 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SEMA3DO95025 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SEMA3DO95025 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SEMA3DO95025 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms