Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.77■□□□□ 0.92
CLDN3O15551 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLDN3O15551 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.77■□□□□ 0.92
CLDN3O15551 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
CLDN3O15551 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLDN3O15551 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
CLDN3O15551 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CLDN3O15551 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CLDN3O15551 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CLDN3O15551 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CLDN3O15551 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
CLDN3O15551 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLDN3O15551 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CLDN3O15551 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CLDN3O15551 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC20.76■□□□□ 0.91
CLDN3O15551 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLDN3O15551 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.76■□□□□ 0.91
CLDN3O15551 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CLDN3O15551 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CLDN3O15551 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.76■□□□□ 0.91
CLDN3O15551 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CLDN3O15551 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CLDN3O15551 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLDN3O15551 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLDN3O15551 TSPY17P-201ENST00000450329 467 ntBASIC20.76■□□□□ 0.91
CLDN3O15551 AL023803.3-201ENST00000615559 522 ntBASIC20.76■□□□□ 0.91
CLDN3O15551 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CLDN3O15551 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLDN3O15551 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLDN3O15551 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLDN3O15551 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CLDN3O15551 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.76■□□□□ 0.91
CLDN3O15551 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CLDN3O15551 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CLDN3O15551 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.75■□□□□ 0.91
CLDN3O15551 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLDN3O15551 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLDN3O15551 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLDN3O15551 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CLDN3O15551 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CLDN3O15551 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CLDN3O15551 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLDN3O15551 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLDN3O15551 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.75■□□□□ 0.91
CLDN3O15551 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.75■□□□□ 0.91
CLDN3O15551 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.75■□□□□ 0.91
CLDN3O15551 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.75■□□□□ 0.91
CLDN3O15551 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CLDN3O15551 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLDN3O15551 RNF165-205ENST00000588679 2904 ntBASIC20.75■□□□□ 0.91
CLDN3O15551 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLDN3O15551 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLDN3O15551 FEM1AP3-201ENST00000403722 1741 ntBASIC20.75■□□□□ 0.91
CLDN3O15551 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.75■□□□□ 0.91
CLDN3O15551 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN3O15551 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.74■□□□□ 0.91
CLDN3O15551 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN3O15551 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN3O15551 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN3O15551 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20.74■□□□□ 0.91
CLDN3O15551 INGX-201ENST00000359239 846 ntBASIC20.74■□□□□ 0.91
CLDN3O15551 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN3O15551 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.74■□□□□ 0.91
CLDN3O15551 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.74■□□□□ 0.91
CLDN3O15551 ECEL1P2-202ENST00000465689 757 ntBASIC20.74■□□□□ 0.91
CLDN3O15551 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.74■□□□□ 0.91
CLDN3O15551 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
CLDN3O15551 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.74■□□□□ 0.91
CLDN3O15551 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.74■□□□□ 0.91
CLDN3O15551 AL353719.1-201ENST00000566847 864 ntBASIC20.74■□□□□ 0.91
CLDN3O15551 AC092338.2-201ENST00000568827 1415 ntBASIC20.74■□□□□ 0.91
CLDN3O15551 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.74■□□□□ 0.91
CLDN3O15551 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN3O15551 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.74■□□□□ 0.91
CLDN3O15551 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN3O15551 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC20.74■□□□□ 0.91
CLDN3O15551 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CLDN3O15551 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN3O15551 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.74■□□□□ 0.91
CLDN3O15551 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN3O15551 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN3O15551 IRX1P1-201ENST00000438849 1838 ntBASIC20.74■□□□□ 0.91
CLDN3O15551 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.73■□□□□ 0.91
CLDN3O15551 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN3O15551 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN3O15551 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN3O15551 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN3O15551 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN3O15551 AC007663.1-201ENST00000438948 1240 ntBASIC20.73■□□□□ 0.91
CLDN3O15551 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.73■□□□□ 0.91
CLDN3O15551 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN3O15551 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN3O15551 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.73■□□□□ 0.91
CLDN3O15551 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CLDN3O15551 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.73■□□□□ 0.91
CLDN3O15551 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.73■□□□□ 0.91
CLDN3O15551 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CLDN3O15551 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN3O15551 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN3O15551 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms