Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRAV40A0A0B4J280 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC15.48■□□□□ 0.07
TRAV40A0A0B4J280 AC138932.1-201ENST00000534164 6830 ntBASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 TSPY5P-201ENST00000426936 936 ntBASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 PHB2-202ENST00000440277 996 ntTSL 5 BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
TRAV40A0A0B4J280 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 TBC1D3P2-202ENST00000577902 1649 ntBASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 Z82202.1-201ENST00000623446 1880 ntBASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 GOLGA6L5P-202ENST00000515341 1828 ntBASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 Telomerase-vert.1-201ENST00000363312 438 ntBASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 GUK1-204ENST00000366721 689 ntTSL 3 BASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 AP000523.1-201ENST00000398242 1049 ntBASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 AC009947.2-201ENST00000444014 672 ntBASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 AL359075.1-203ENST00000462729 1002 ntBASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 AC140113.3-201ENST00000605663 199 ntBASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms